View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16736_high_4 (Length: 360)
Name: NF16736_high_4
Description: NF16736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16736_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 454546 - 454222
Alignment:
| Q |
1 |
tggcaaaaatgattgatatagatgaacatcaaggaaatactaagagaattgctggaacttagtaagtatttgcaaacttgaatgctatattctttagttt |
100 |
Q |
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| T |
454546 |
tggcaaaaatgattgatatagatgaacatcaaggaaatactaagagaattgctggaacttagtaagtatttgcaaacttgaatgctatattccttagttt |
454447 |
T |
|
| Q |
101 |
ttcttgttactatctaattgaaagcacatggtagaatctaatttgaatttttaactttcatttagtggatcctacaatttcatataagactaatagagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
454446 |
ttcttgttactatctaattgaaagcacatggtagaatctaatttgaatttttaactttcatttagtggatctaacaaactcatataagactaatagagtt |
454347 |
T |
|
| Q |
201 |
tttggaacatttgtggcttaccactagctggacgcacgtttagcctatatttggctcagcgacacctttttcacatctagccaaaaccacaatagaaatc |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||| || |||||| | |||||||||||||||||||||||||||| |||||||| |
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| T |
454346 |
tttggaacatttgtggcttaccactagccggacgcacatttagcctatgttcagctcagtggcacctttttcacatctagccaaaaccacggtagaaatc |
454247 |
T |
|
| Q |
301 |
catgtttctagtgaagctacaaata |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
454246 |
catgtttctagtgaagctacaaata |
454222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 20101128 - 20101045
Alignment:
| Q |
242 |
agcctatatttggctcagcgacacctttttcacatctagccaaaaccacaatagaaatccatgtttctagtgaagctacaaata |
325 |
Q |
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| T |
20101128 |
agcctatgtttggctcagcggtacctttttcacatctgcccaaaaccacggcataaattcacgtttctagtgaagctacaaata |
20101045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 19783108 - 19783051
Alignment:
| Q |
264 |
acctttttcacatctagccaaaaccacaatagaaatccatgtttctagtgaagctaca |
321 |
Q |
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||||||||||||||| |||||||||| || |||| || |||||||||||||||||| |
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| T |
19783108 |
acctttttcacatctgcccaaaaccaccgtacaaattcacgtttctagtgaagctaca |
19783051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 28781293 - 28781376
Alignment:
| Q |
242 |
agcctatatttggctcagcgacacctttttcacatctagccaaaaccacaatagaaatccatgtttctagtgaagctacaaata |
325 |
Q |
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||||||| ||||||||||| ||||||||||||||| |||||||||| | |||| || |||||||||||||||| ||||| |
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| T |
28781293 |
agcctatgtttggctcagccgtacctttttcacatctgcccaaaaccacggcacaaattcacgtttctagtgaagctaaaaata |
28781376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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