View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16736_low_1 (Length: 901)
Name: NF16736_low_1
Description: NF16736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16736_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 354 - 690
Target Start/End: Complemental strand, 42913492 - 42913151
Alignment:
| Q |
354 |
tgatcaccaacaatgatgcaaaaattgagaagaatgaagaagaggctccaattgagaagagtgaataaggagaaaatgtgtgaagtttatggaagtgttt |
453 |
Q |
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| T |
42913492 |
tgatcaccaacaatgatgcaaaaattgagaagaatgaagaagaggctccaattgagaagagtgaataaggagaaaatgtgtgaagtttatggaagtgttt |
42913393 |
T |
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| Q |
454 |
aattagagagagtggttaattacattaatcactttaagttaagtttcattatgtcttgttg---aatgtcttcttcttgttacttgtttagtggtgtaat |
550 |
Q |
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| T |
42913392 |
aattagagagagtggttaattacattaatcactttaagttaagtttcactatgtcttgttgtttaatgtctttttcttgttacttgtttagtggtgtaat |
42913293 |
T |
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| Q |
551 |
aaaatagctatagtacttactaccagtagctaaatgtatgggtgatgtgatgacccatttgaatttacctaatgtaaccttttcagtaatatgttccttt |
650 |
Q |
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| T |
42913292 |
aaaatagctatagtacttactactagtagctaaatgtatgggtgatgtgatgacccatttgaatttacctaatgtaaccttttcagtaatatgttccttt |
42913193 |
T |
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| Q |
651 |
gtatgattatgca-tttggctttgtttg-tttgttataataa |
690 |
Q |
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| T |
42913192 |
gtatgattatgcattttggctttgtttgttttgttataataa |
42913151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 42913829 - 42913575
Alignment:
| Q |
17 |
aaagaggtggtagaagaagttgttgttcctgcgaaagatacagaagaggcaacaaagaaggaagaacaaaccgagacaaaggaacctgtcgaggaaacaa |
116 |
Q |
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| T |
42913829 |
aaagaggtggtagaagaagttgttgtgcctgtgaaagatacagaagaggaaacaaagaaggaagaacaaaccgagacaaaggaacctgtcgaggaaacaa |
42913730 |
T |
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| Q |
117 |
aagaaaatgttgattcggttaatgttgaggaaacgaaagaaaacggtgattctgttgttgaggttgttcaagaaaaaccagctgaagaatctgagacaga |
216 |
Q |
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| T |
42913729 |
aagaaaacggtaattctcttaatgttgaggaaacgaaagaaaacggtgattctgttgttgaggctgttcaggaaaaaccagctgaagagtctgagacagt |
42913630 |
T |
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| Q |
217 |
acatgttgttaaggatgagaatgtggtagctgagcctgaaactaaggacaatgtt |
271 |
Q |
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| T |
42913629 |
aaatgttgttaaggatgagaatgtggtagctgagcctgaaactaaggacaatgtt |
42913575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 734 - 782
Target Start/End: Original strand, 18006424 - 18006472
Alignment:
| Q |
734 |
gaactggttcattcatactagaattggttaacagaaacagttttacctc |
782 |
Q |
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| T |
18006424 |
gaactggttcattcatacaagaattggttaacagaaacagttttacctc |
18006472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 807 - 844
Target Start/End: Original strand, 18006496 - 18006533
Alignment:
| Q |
807 |
caaccttttcaaatctgaagtcaagttagtgtgatctc |
844 |
Q |
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| T |
18006496 |
caaccttttcaaatctgaagtcaagttagtgtgatctc |
18006533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 842 - 886
Target Start/End: Original strand, 18006550 - 18006594
Alignment:
| Q |
842 |
ctccacatgcaaatgaaaaacgccaaaatttaaccttaaatcatg |
886 |
Q |
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| T |
18006550 |
ctccacatgcaaataaaaaacaccaaaatttaaccttaaatcatg |
18006594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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