View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16736_low_2 (Length: 710)
Name: NF16736_low_2
Description: NF16736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16736_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 309 - 695
Target Start/End: Original strand, 42798251 - 42798635
Alignment:
| Q |
309 |
atcttaaaactgatccaatttctatttgatttgtatgaatgctctcttttgtcgattctgtgtagaaatagcttatatttgggaagcttgtatgaatcac |
408 |
Q |
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| T |
42798251 |
atcttaaaactgatccaatttctatttaatttgtatgaatgctct--tttgtcgattctgtgtagaaatagcttatatttgggaagcttgtatgaatcac |
42798348 |
T |
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| Q |
409 |
agattaaaatttagcagacatgatagaatcacatattaatattggaacatgttactactttgtcaacattgtagttaatgtagttataagttcatttaga |
508 |
Q |
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| T |
42798349 |
agattaaaatttagcagacatgatagaatcacatattaatattggaagatgttactactttgtcaacattgtagttaatgtagttataagttcatttaga |
42798448 |
T |
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| Q |
509 |
cctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcttgatccatgacaggcagggaagtgtagagc |
608 |
Q |
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| T |
42798449 |
cctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcaagatccatgacaggcagggaagtgtagagc |
42798548 |
T |
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| Q |
609 |
aagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgtgatggctaactttgggataatcacagtaactg |
695 |
Q |
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| T |
42798549 |
aagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgcgatggctaactttgggataatcacagtaactg |
42798635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 42797618 - 42797791
Alignment:
| Q |
1 |
gagcctgcaaatagagaaagaaaatgtattccaacgaattggtaaaattgaacaaggatattgaactatcaaaaacttctttggaagataagatgtgtca |
100 |
Q |
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| T |
42797618 |
gagcctgcaaatagagaaagaaaatgtattccaacgaattggtagaattg-------------aactatcaaaaacttctttggaagataagatgtgtca |
42797704 |
T |
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| Q |
101 |
tttagaagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttccaaaataatta |
187 |
Q |
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| T |
42797705 |
tttagaagcagttttatctaaccttcaccaaaatattcaatccatttccctatacatattaaaacaacgtaacttccaaaataatta |
42797791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 42798152 - 42798208
Alignment:
| Q |
181 |
ataattattatcaactatatgctaaatcaagaaaccgtttgataatatgagttgtgc |
237 |
Q |
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| T |
42798152 |
ataattattatcaactatatgctaaatcaagaaaccatttgataatatgagttgtgc |
42798208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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