View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16736_low_4 (Length: 485)
Name: NF16736_low_4
Description: NF16736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16736_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 52 - 465
Target Start/End: Original strand, 39694927 - 39695340
Alignment:
| Q |
52 |
taacaatgtgctgatctatatgcaaatgcaggttcttcaatcgggcatctctaataactgatgcagacctaaaatcagatggctcagttaaaaaatcatc |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39694927 |
taacaatgtgctgatctatatgcaaatgcaggttcttcaatcgggcatctctaataactgatgcagacctaaaatcagatggctcagttaaaaaatcatc |
39695026 |
T |
|
| Q |
152 |
atggagactatgcacagttcaacaagtggatgatttcnnnnnnntaattggaatcctaccattgtggtcttcaagtatattcttagcaactccaatagca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39695027 |
atggagactatgcacagttcaacaagtggatgatttcaaaaaaataattggaatcctaccattgtggtcttcaagtatattcttagcaactccaatagca |
39695126 |
T |
|
| Q |
252 |
atccaaagtagcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttattgtcttaa |
351 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
39695127 |
atccaaagttgcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttatagtcttga |
39695226 |
T |
|
| Q |
352 |
tatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaatgcctatgccgctccaacgaataggagt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695227 |
tatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaatgcctatgccgctccaacgaataggagc |
39695326 |
T |
|
| Q |
452 |
aggacatgtgttga |
465 |
Q |
| |
|
|||||||||||||| |
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|
| T |
39695327 |
aggacatgtgttga |
39695340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 65 - 465
Target Start/End: Original strand, 39703852 - 39704252
Alignment:
| Q |
65 |
atctatatgcaaatgcaggttcttcaatcgggcatctctaataactgatgcagacctaaaatcagatggctcagttaaaaaatcatcatggagactatgc |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |
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|
| T |
39703852 |
atctatatgcaaatgcaggttcttcaatcgcgcaactctgataactgatgcagacctaaaatcagatggctcaattaagaaatcatcatggaaactatgc |
39703951 |
T |
|
| Q |
165 |
acagttcaacaagtggatgatttcnnnnnnntaattggaatcctaccattgtggtcttcaagtatattcttagcaactccaatagcaatccaaagtagct |
264 |
Q |
| |
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||||||||||||||||| |||||| || |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39703952 |
acagttcaacaagtggaagatttcaaaaagatatttggaatcctaccactatggagttcaagtatattcttagcaactccaatagcaatccaaagtagtg |
39704051 |
T |
|
| Q |
265 |
tggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttattgtcttaatatcagcacccat |
364 |
Q |
| |
|
|| |||||||||||||||| ||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||| ||| |||||||| || |||| |
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|
| T |
39704052 |
tgacggtacttcaagctttagccatggatcgctcattaggaccccatttcaaaattccagctggttctgtttctgttatagtcataatatcaacatccat |
39704151 |
T |
|
| Q |
365 |
tttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaatgcctatgccgctccaacgaataggagtaggacatgtgttg |
464 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| ||||||||||| |||| | |||| ||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
39704152 |
tttcctcacctttcttgacagagtgctattgccatgttggcataagattactggaaaaacgcctatgccacttcaacgaataggagtaggacatgtgttg |
39704251 |
T |
|
| Q |
465 |
a |
465 |
Q |
| |
|
| |
|
|
| T |
39704252 |
a |
39704252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 57 - 473
Target Start/End: Complemental strand, 39929531 - 39929115
Alignment:
| Q |
57 |
atgtgctgatctatatgcaaatgcaggttcttcaatcgggcatctctaataactgatgcagacctaaaatcagatggctcagttaaaaaatcatcatgga |
156 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| || || ||||||||||||||||||||||| | ||| ||||| || |||| ||||||||||||| |
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|
| T |
39929531 |
atgtgctgatcgatatgcaaatgcaggtttttcaaccgtgccgctctaataactgatgcagacctacactcaaatggcacaattaagaaatcatcatgga |
39929432 |
T |
|
| Q |
157 |
gactatgcacagttcaacaagtggatgatttcnnnnnnntaattggaatcctaccattgtggtcttcaagtatattcttagcaactccaatagcaatcca |
256 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| || ||||||| ||||||| ||| |||||||| ||||| || ||| |||||||| ||| || |
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|
| T |
39929431 |
gactatgcacaattcaacaagtggaagatttcaaaaaaatagttggaatattaccattatggacttcaagtctattcctatcaattccaatagtaatgca |
39929332 |
T |
|
| Q |
257 |
aagtagcttggttgtacttcaagctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttattgtcttaatatca |
356 |
Q |
| |
|
|| ||| || |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||||| |
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|
| T |
39929331 |
aatggacttcattatacttcaagctttagtcatggatcgttctttaggataccattttgaaatcccagctggttctatttctgttatagtcttaatatca |
39929232 |
T |
|
| Q |
357 |
gcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttaccaggaaaatgcctatgccgctccaacgaataggagtaggac |
456 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||| |||| || |||||| | |||||||||||||| |
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|
| T |
39929231 |
gcacccattttcctcacttttcttgacagggtgctattgccaagttggcataaggttaccagaaaatctcctaagctgctccatcaaataggagtaggac |
39929132 |
T |
|
| Q |
457 |
atgtgttgaatattctt |
473 |
Q |
| |
|
||||||| ||| ||||| |
|
|
| T |
39929131 |
atgtgttcaatgttctt |
39929115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 216 - 465
Target Start/End: Complemental strand, 39935024 - 39934775
Alignment:
| Q |
216 |
tggtcttcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcgttcattaggaccccatttta |
315 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
39935024 |
tggtcttcaagtatattcctatcaactccaatagcaatccaaagtagcttggttgtacttcaagctttagtcatggatcggtctttaggaccccatttta |
39934925 |
T |
|
| Q |
316 |
aaatcccagctagttctgtttctgttattgtcttaatatcagcacccattttcctcacatttcttgacagagtgctattaccaggttggcataaggttac |
415 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||| ||||||||||| |||| |
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|
| T |
39934924 |
aaatcccagctagttttgtttctgttattgtcttaatatcagcacccatttttctcacttttcttgacagggtgctcttgccatgttggcataagattac |
39934825 |
T |
|
| Q |
416 |
caggaaaatgcctatgccgctccaacgaataggagtaggacatgtgttga |
465 |
Q |
| |
|
| | ||| | |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
39934824 |
cggcaaatcacttatgccgctccagcgaataggagcaggacatgtgttga |
39934775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 78 - 465
Target Start/End: Complemental strand, 38062191 - 38061800
Alignment:
| Q |
78 |
tgcaggttcttcaatcgggcatctctaataactgatgcagacctaaaatcagatggctcagttaaaaaatcatcatggagactatgcacagttcaacaag |
177 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
38062191 |
tgcaggttcttcaatcgtgcagctttaataactgatgcagacctaaactcagatggctcagttaagaattcatcatggagactatgcacagttcaacaag |
38062092 |
T |
|
| Q |
178 |
tggatgatttcnnnnnnntaattggaatcctaccattgtggtcttcaagtatattcttagcaactccaatagcaatccaaagtagcttggttgtacttca |
277 |
Q |
| |
|
|||| |||||| |||||||||| ||||| | ||| |||||||| ||||| | ||| |||||||| || | | | | ||| |||||||||| |
|
|
| T |
38062091 |
tggaagatttcaaaaaaataattggaatattaccactatggacttcaagtctattcctttcaattccaatagtaaccgagaatttcttcattgtacttca |
38061992 |
T |
|
| Q |
278 |
agctttagtcatggatcgttcattaggaccccattttaaaatcccagctagttctgtttctgttatt---gtcttaatatcagcacccattttcctcaca |
374 |
Q |
| |
|
|| |||| ||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||| || ||||||||| || | ||||||||||| |
|
|
| T |
38061991 |
agatttaatcatggatcgttctgtaggatctcattttaaaatcccagctggttctgtttctgttattatagtgttaatatcaacatctattttcctcacc |
38061892 |
T |
|
| Q |
375 |
tttcttgacagagtgctattaccaggttggcataaggttacc-aggaaaatgcctatgccgctccaacgaataggagtaggacatgtgttga |
465 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||| | | ||| | |||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38061891 |
tttcttgacagagtgttattgccaggttggaatacgataaccgaaaaaaaagcctatgccgctccaacgaataggagtaggctatgtgttga |
38061800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 38180949 - 38180844
Alignment:
| Q |
52 |
taacaatgtgctgatctatatgcaaatgcaggttcttcaatcgggcatctctaataactgatgcagacctaaaatcagatggctcagttaaaaaatcatc |
151 |
Q |
| |
|
||||||||| ||||| |||||||||||| | ||| |||||||| ||| ||||||||| ||||||||||||||| |||||||||| |||||| || ||||| |
|
|
| T |
38180949 |
taacaatgtactgatatatatgcaaatgaaagttattcaatcgtgcaactctaataattgatgcagacctaaactcagatggctaagttaagaagtcatc |
38180850 |
T |
|
| Q |
152 |
atggag |
157 |
Q |
| |
|
|||||| |
|
|
| T |
38180849 |
atggag |
38180844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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