View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16736_low_5 (Length: 465)
Name: NF16736_low_5
Description: NF16736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16736_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 329
Target Start/End: Original strand, 18947266 - 18947582
Alignment:
| Q |
12 |
agcagagaccaaaggagcacttgtcatgggtgagcttttcacttgtttgagtagtgaagactcaagtggcaattaagttggcaccaagggttagtattta |
111 |
Q |
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| T |
18947266 |
agcagaaaccaaaggaacacttgtcatgggtgagcttttcacttgtttgagtagtgaagactcaagtggcaattaagttggaaccaagggttagtattta |
18947365 |
T |
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| Q |
112 |
tatatgaaggttgaagctgaatttttataaagtttccttaatgataacacgtgaaactgaatccaattaatcacacgttttaatttttaaaaagaagtgc |
211 |
Q |
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| T |
18947366 |
tatatgaaggttgaagctgaatttttataaagtttccttaatgataacacgtgaaactgaaaccaattaatcacacgttttaatttttaaaaagaagtgc |
18947465 |
T |
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| Q |
212 |
taactaaacattctctaacacacannnnnnnacacgtctctttgattgcttaaaatttcacttacatctaaatcatgtgaattttattttaatttagtag |
311 |
Q |
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| T |
18947466 |
taactaaacattctctaacacacatttttttacacgtctttttgattgcttaaaa-ttcacttacgtctaaatcatgtgaatctcattttaatttagtag |
18947564 |
T |
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| Q |
312 |
ggtcgatgtgaattctaa |
329 |
Q |
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| T |
18947565 |
gatcgatgtgaatactaa |
18947582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 398 - 449
Target Start/End: Original strand, 18947651 - 18947702
Alignment:
| Q |
398 |
atatgtgccaaacatttacaaattcgttaacaaattctcaactcattagact |
449 |
Q |
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| T |
18947651 |
atatgtgccaaacatttacgaattcgttaacaaattctcaactcattagact |
18947702 |
T |
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