View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16736_low_7 (Length: 350)
Name: NF16736_low_7
Description: NF16736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16736_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 105 - 336
Target Start/End: Complemental strand, 55449274 - 55449043
Alignment:
| Q |
105 |
aataaacactacattgtcttactttattttatggaatgatctttgatggaacagtgataatgcttcctggtgtccaaaactcacatatggaagaacttat |
204 |
Q |
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| T |
55449274 |
aataaacactacattgtcttactttattttatggaatgatctttgatggaacagtgataatgcttcttggtgtccaaaactcacatatggaagaacttat |
55449175 |
T |
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| Q |
205 |
ttgtgttgaaaatcgtcaagatgacattttcaaatttgatgaagaagtcattgaagttcaatgcgaaacatcacgaaacaacaatagagaagaagcagaa |
304 |
Q |
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| T |
55449174 |
ttgtgttgaaaatcgtcaagatgacattttcaaatttgatgaagaagtcattgaagttcaatgcgaaacatcacgaaacaataatagagaagaagcagaa |
55449075 |
T |
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| Q |
305 |
ctatcattttctgaatggttggaggtggatga |
336 |
Q |
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| T |
55449074 |
ctatcattttctgaatggttggaggtggatga |
55449043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 55469306 - 55469355
Alignment:
| Q |
105 |
aataaacactacattgtcttactttattttatggaatgatctttgatgga |
154 |
Q |
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| T |
55469306 |
aataaacactacattgtcttactttattttatggaatgatctttgatgga |
55469355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 33522839 - 33522790
Alignment:
| Q |
105 |
aataaacactacattgtcttactttattttatggaatgatctttgatggaa |
155 |
Q |
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| T |
33522839 |
aataaacactacattatcttacttt-ttttatggaatgatctttgatggaa |
33522790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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