View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16736_low_8 (Length: 265)
Name: NF16736_low_8
Description: NF16736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16736_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 9047470 - 9047260
Alignment:
| Q |
12 |
ttctagcaatgatggtagcacagaagtttctaatgtaaatgtaatatggtatcttccgataatttcaagattnnnnnnnnttgtttactaatgtaaatga |
111 |
Q |
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| T |
9047470 |
ttctagcaatgatggtagcataaaagtttctaatgtaaatgtaatatggtatcttccgataatttcaagattaaaaaaaattgtttactaatgtaaatga |
9047371 |
T |
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| Q |
112 |
cataaagtatatatgtaacatgctgatgagaag---nnnnnnnnngggaaatggttgatataaaaagacaattcgtgctttaaaaagagaccaagtttat |
208 |
Q |
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| T |
9047370 |
cataaagtatatatgcaacatgctgatgagaaggaaaaaaaaaaaaggaaatggttgatataaaaagacaattcgtactttaaaaagagaccaagtttat |
9047271 |
T |
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| Q |
209 |
gatttacaagg |
219 |
Q |
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| T |
9047270 |
gatttacaagg |
9047260 |
T |
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