View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16737_high_4 (Length: 351)
Name: NF16737_high_4
Description: NF16737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16737_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 31 - 331
Target Start/End: Original strand, 31541573 - 31541866
Alignment:
| Q |
31 |
gaaggaatgtaaattgtaattgtaatatgaatagaggtggatcatggaccaatatatatatnnnnnnnnnnnnnnngatgatcttaaattaattattaac |
130 |
Q |
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| T |
31541573 |
gaaggaatgtaaattgcaattgtaatatgaatagaggtggatcatggaccaatatatatataaaaaaa--------gatgatcttaaattaattattaac |
31541664 |
T |
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| Q |
131 |
gaggttgaaccc-tcttcaagctactgttcccattagcactattgttaacacttaacagagtataccatcaactattataggctgtaaagagagagcaac |
229 |
Q |
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| T |
31541665 |
gaggttgaaccccttttcaagccactgttcccattagcattattgttaacacttaacagagtataccatcaactattataggctgtaaagagagaacaac |
31541764 |
T |
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| Q |
230 |
aatataatgcgatcaaagatcacttaatttgattacttttcccatcaaatttttcatgaaaaatctaagagnnnnnnnccatcattcacacgtgatgatg |
329 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
31541765 |
aatataatgcgatcaaagatcacttaatttgattgcttttcccatcaaatttttcatgaaaaatctaagagagaaaaaccatcattcacacgtgttgatg |
31541864 |
T |
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