View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16737_low_2 (Length: 358)
Name: NF16737_low_2
Description: NF16737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16737_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 35335220 - 35335550
Alignment:
| Q |
1 |
ataatattttttatatgatccttaaacaatttatttagaccatttgttcgcatgactcttgccaataaaatatcatcttattgttctacttttcaacaaa |
100 |
Q |
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| T |
35335220 |
ataatattttttatatgatccttaaacaatttatttagaccatttgttcgcatgactcttg---ataa----------tatt-------ttttcaacaaa |
35335299 |
T |
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| Q |
101 |
agaacgcacacannnnnnnnnnnngtatataatatccgttacttgaaatactaatcattgtgatacaatgcaaatcttgatatatagtaggaaaaggtga |
200 |
Q |
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| T |
35335300 |
agaacgcacacattttttctttttgtatgtaatatccgtttcttgaaatactaatcattgtgatacaatgcaaatcttgatatatagtaggaaaatgtga |
35335399 |
T |
|
| Q |
201 |
acaaatgcagaacagctacaattacagttgcaatgtcattgcaaagatcttt-aaaccattaaaactatcatgctaatac---------agtgactaatg |
290 |
Q |
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| T |
35335400 |
acaaatgcagaacagctacaattacagttgcaatgtcattgcaaagatctttaaaaccattaaaactatcatgctaatactaactagttagtgactaatg |
35335499 |
T |
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| Q |
291 |
caagttaacacattactactttatgcagcgggagcatagtcataaccaccg |
341 |
Q |
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| T |
35335500 |
taagttaacacattactactttatgcagcgggagcatagtcataaccaccg |
35335550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 35368113 - 35368174
Alignment:
| Q |
280 |
agtgactaatgcaagttaacacattactactttatgcagcgggagcatagtcataaccaccg |
341 |
Q |
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| T |
35368113 |
agtgactaatgtaagttaacacattagagttttatgcagcgggagcatagtcataaccaccg |
35368174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 35350912 - 35350956
Alignment:
| Q |
212 |
acagctacaattacagttgcaatgtcattgcaaagatctttaaac |
256 |
Q |
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| T |
35350912 |
acagccacaattacagttgcaatgtcattgcaaagacctttaaac |
35350956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 35371486 - 35371544
Alignment:
| Q |
283 |
gactaatgcaagttaacacattactactttatgcagcgggagcatagtcataaccaccg |
341 |
Q |
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| T |
35371486 |
gactaatgtaagttaacacattagagttttaggcagcgggagcatagtcataaccaccg |
35371544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 341
Target Start/End: Original strand, 35364268 - 35364299
Alignment:
| Q |
310 |
tttatgcagcgggagcatagtcataaccaccg |
341 |
Q |
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| T |
35364268 |
tttatgcagcgggagcatagtcataaccaccg |
35364299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 341
Target Start/End: Original strand, 35374306 - 35374337
Alignment:
| Q |
310 |
tttatgcagcgggagcatagtcataaccaccg |
341 |
Q |
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| T |
35374306 |
tttatgcagcgggagcatagtcataaccaccg |
35374337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 35355586 - 35355647
Alignment:
| Q |
280 |
agtgactaatgcaagttaacacattactactttatgcagcgggagcatagtcataaccaccg |
341 |
Q |
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| T |
35355586 |
agtgacttatgtaagttaacacattagagttttaggcagcaggagcatagtcataaccaccg |
35355647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 35374230 - 35374282
Alignment:
| Q |
215 |
gctacaattacagttgcaatgtcattgcaaagatcttt-aaaccattaaaacta |
267 |
Q |
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| T |
35374230 |
gctacaattacagttacaatgtcattgc-aagacctttaaaaccattaaaacta |
35374282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 35345991 - 35346039
Alignment:
| Q |
292 |
aagttaacacattactactttatgcagcgggagcatagtcataaccacc |
340 |
Q |
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| T |
35345991 |
aagttaacacattagagttttacgcagcgggagcatagtcataaccacc |
35346039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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