View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16738_high_4 (Length: 311)
Name: NF16738_high_4
Description: NF16738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16738_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 13261598 - 13261878
Alignment:
| Q |
13 |
aaaatcttcaacaactctaaagccacgatcttccccttattcgactccggatccgcagacgcctccttcggcggtgtcttcattgacaatttacaaagtg |
112 |
Q |
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| T |
13261598 |
aaaatcttcaacaactctaaagccacaatcttccccttattcgactccggatccgcagacgcctccttcggcggtgtcttcattgacaatttacaaagtg |
13261697 |
T |
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| Q |
113 |
ctctaaacaccaaaaaagcatccctcctcaacttattcccaatctgaacttccaaatcatcatccctctcaaccaactccccgtcaactaactccccttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13261698 |
ctctaaacaccaaaaaagcatccctcctcaacttattcccaatctgaacttccaaatcatcatccctctcaatcaactccccgtcaactaactccccttt |
13261797 |
T |
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| Q |
213 |
cctcccctccaacgccgtcttatacatactaatctcccaatacttcgcatccaacatatccttatcagtagaatccaacaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13261798 |
cctcccctccaacgccgtcttatacatactaatctcccaatacttcgcatccaacatatccttatcagtagaatccaacaa |
13261878 |
T |
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Back To:
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Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 28134539 - 28134250
Alignment:
| Q |
7 |
tccaataaaatcttcaacaactctaaagccacgatcttccccttattcgactccggatccgcagacgcctccttcggcggtgtcttcattgacaatttac |
106 |
Q |
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||||| ||||| ||||||||||| || ||||| |||||||| | |||||| ||||| || || | |||||| | ||| | |||||| |||||||||| |
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| T |
28134539 |
tccaacaaaattttcaacaactccaacgccacaatcttccctctcatcgactgtggatcagcggaggtctccttagacggcgacttcatagacaatttac |
28134440 |
T |
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| Q |
107 |
aaagtgctctaaacaccaaaaaagcatccctcctcaacttattcccaatctgaacttccaaatcatcatccct---ctcaaccaactccccgtcaactaa |
203 |
Q |
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||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||| |||| |||||| || || || |
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| T |
28134439 |
aaagtgccctaaacaccaaaaaagcatctctcctcagcttattcccaatctgaatctccaaatcatcatccctctcctccaccacctccccatccaccaa |
28134340 |
T |
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| Q |
204 |
ctcccctttcctcccctccaacgccgtcttatacatactaatctcccaatacttcgcatccaacatatccttatcagtagaatccaacaa |
293 |
Q |
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||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
28134339 |
ctcccctttcctcccttccaaagccgacttatacatgctaatctcccaatactttgcatccaacatatccttatcggtcgaatccaacaa |
28134250 |
T |
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