View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16738_low_1 (Length: 614)
Name: NF16738_low_1
Description: NF16738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16738_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 600
Target Start/End: Original strand, 35681075 - 35681674
Alignment:
| Q |
1 |
gacaccaatggcagcatagggtttttggctaacagaaaaatgattagagattgtgataagccaaaagcacaaactgatttggcaaaatttcacaacacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681075 |
gacaccaatggcagcatagggtttttggctaacagaaaaatgattagagattgtgataagccaaaagcacaaactgatttggcaaaatttcacaacacat |
35681174 |
T |
|
| Q |
101 |
gctcggttgtggtaaaagtctgcgacactgcaactgagagtaatgaagcgctaaatgctgcaaagttgaactttcaagatattataaactctcccctaga |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681175 |
gctcggttgcggtaaaagtctgcgacactgcaactgagagtaatgaagcgctaaatgctgcaaagttgaactttcaagatattataaactctcccctaga |
35681274 |
T |
|
| Q |
201 |
tgcgtccgacgtgaagatagacaattttgctgagaaaggtcagtgcttcaatccagaaacagtggctcattggttgcggttgcttcatgatgtggaagaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
35681275 |
tgcgtccgacgtgaagatagacaattttgctgagaaaggtcagtgcttcaatccagaaacagtgggtcattggttgcggttgcgccatgatgtggaagaa |
35681374 |
T |
|
| Q |
301 |
gtaggaagggtacacacaatgggcaaacacaataaatacatttataaggatccatactttgccttcattttcttaaggtgtgatatttttaatctctgca |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35681375 |
gtaggaagggtacacacaatgggcaaacacaataaatacatttataaggatccatactttgccttcattttcttaaggtgtgatgtttttaatctctgca |
35681474 |
T |
|
| Q |
401 |
atcctattcttcaacattatcaccttgctgctatcctattagttcagtttcttgataaacaaaacctccactcatgatcaatattatgcatatcttatga |
500 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35681475 |
atcctattcttcaacattatcaccttgccgctatcctattagttcagtttcttgataaacaaaacctccactcatgatcaatattatgcatattttatga |
35681574 |
T |
|
| Q |
501 |
atgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttattaa |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681575 |
atgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttattaa |
35681674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 444 - 587
Target Start/End: Original strand, 31635407 - 31635550
Alignment:
| Q |
444 |
tcagtttcttgataaacaaaacctccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggacc |
543 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||| |
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| T |
31635407 |
tcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaacc |
31635506 |
T |
|
| Q |
544 |
aagaaacgttagactaagggtactctcaccatttggtgttctgc |
587 |
Q |
| |
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||||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
31635507 |
aagaaacattataccaagggtactctcaccatttggtgttctgc |
31635550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 6e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 76 - 320
Target Start/End: Complemental strand, 32535314 - 32535070
Alignment:
| Q |
76 |
gatttggcaaaatttcacaacacatgctcggttgtggtaaaagtctgcgacactgcaactgagagtaatgaagcgctaaatgctgcaaagttgaactttc |
175 |
Q |
| |
|
|||||||||||| ||| | |||||||||| | || ||||||||||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
32535314 |
gatttggcaaaacttcgcgacacatgctccgctgcggtaaaagtctatgacattgcaactgagagtaatgaagcactaaatgctgcagagttgaactttc |
32535215 |
T |
|
| Q |
176 |
aagatattataaactctcccctagatgcgtccgacgtgaagatagacaattttgctgagaaaggtcagtgcttcaatccagaaacagtggctcattggtt |
275 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |
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| T |
32535214 |
cggatattatcaactctcccctagatgcgtccgacgtgaagatagacaattttgctgagaaaggtgagtgcttcaatccagaaacagtagctcattggct |
32535115 |
T |
|
| Q |
276 |
gcggttgcttcatgatgtggaagaagtaggaagggtacacacaat |
320 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
32535114 |
gcggttgtgttatgatgtggaagaagtaggaagggtacacacaat |
32535070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 444 - 587
Target Start/End: Original strand, 4302720 - 4302863
Alignment:
| Q |
444 |
tcagtttcttgataaacaaaacctccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatataaagtgggacc |
543 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| ||| |
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| T |
4302720 |
tcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaacc |
4302819 |
T |
|
| Q |
544 |
aagaaacgttagactaagggtactctcaccatttggtgttctgc |
587 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
4302820 |
aagaaacattatactaagggtactctcaccatttggtgttctgc |
4302863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 433 - 587
Target Start/End: Original strand, 37192603 - 37192761
Alignment:
| Q |
433 |
atcctattagttcagtttcttgataaacaaaacctccactcatgatcaatattatgcatatcttatgaatgcatttttaagctttactaaaggcttatat |
532 |
Q |
| |
|
||||||||| |||||||||||| ||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37192603 |
atcctattatgtcagtttcttgaaaaacaaagcttctactcttgatcaatattatgcatatcttatgaatgcatttttaagctttattaaaggcttatat |
37192702 |
T |
|
| Q |
533 |
aaagtgggaccaagaaacgttag----actaagggtactctcaccatttggtgttctgc |
587 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
37192703 |
gaagtgggaccaagaaacgttagactaactaagggtactctcaccatttgatgttctgc |
37192761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 320 - 434
Target Start/End: Original strand, 37192119 - 37192233
Alignment:
| Q |
320 |
tgggcaaacacaataaatacatttataaggatccatactttgccttcattttcttaaggtgtgatatttttaatctctgcaatcctattcttcaacatta |
419 |
Q |
| |
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|||| ||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37192119 |
tggggaaacacaatgaatacatttctaaggatccatcctatgccttcattttcttaaggtgtgatgtttttaatctctgcaatcctattcttcaacatta |
37192218 |
T |
|
| Q |
420 |
tcaccttgctgctat |
434 |
Q |
| |
|
||||||||||||||| |
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| T |
37192219 |
tcaccttgctgctat |
37192233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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