View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16738_low_2 (Length: 530)
Name: NF16738_low_2
Description: NF16738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16738_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 354
Target Start/End: Complemental strand, 5213887 - 5213530
Alignment:
| Q |
15 |
ggccatggttgttgtccattgtgcctgagatgctttcccgtgcacatgacattgcagagggacaattggcctatgtcccatgcac--------tttcctt |
106 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5213887 |
ggccctggttgttgtccattgtgcccgagatgctttcccgtgcacatgacactgcagagggacaattggcctatgtcccatgcacccatgctctttcctt |
5213788 |
T |
|
| Q |
107 |
gcggnnnnnnnntcaacttgtgctgattttttccatatgggttggaggaaaaacctagaattctaatgtaaatcttgttggaaatatgatgaagtatgaa |
206 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5213787 |
gcggaaaaaaaataaacttgtgctgattttttccatatgggttggaggaaaaacctagaattctaatgtaaatcttgttggaaatatgatgaagtgtgaa |
5213688 |
T |
|
| Q |
207 |
ggtgnnnnnnncacaagaaaaatagga-gggtctgacacaaacatcggctactatatgccaatttcatgaaattcatatt---------gaacaagaaca |
296 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5213687 |
ggtgagaaaaacacaagaaaaataggaggggtctgacacaaacatcggctactatatgccaatttcatgaaattcatattgaacaagaggaacaagaaca |
5213588 |
T |
|
| Q |
297 |
aggatgtattctttctttcatataagacaccttaatagtgattgaggcgtcaagctaa |
354 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5213587 |
aggatgtattatttctttcatataagacaccctaatagtgattgaggcgtcaagctaa |
5213530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 356 - 510
Target Start/End: Complemental strand, 5212540 - 5212384
Alignment:
| Q |
356 |
gaagttatacaagaagtaaatgagagcaacccattggtcatagcacnnnnnnnnncg--agcaaagcacttattgttatagagtatcaaagaggagtttt |
453 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5212540 |
gaagttaaacaagaagtaaatgagagcaatccattggtcatagcacttattgtttttttagcaaagcacttattgttatagagtatcaaagaggagtttt |
5212441 |
T |
|
| Q |
454 |
ttctcctcccttatgctatagagtatgttttattttctttgtttatttattcagtta |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5212440 |
ttctcctcccttatgctatagagtatgttttattttctttggttatttattcagtta |
5212384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University