View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16738_low_3 (Length: 328)
Name: NF16738_low_3
Description: NF16738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16738_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 32391204 - 32391499
Alignment:
| Q |
21 |
agcctgacatggcagaaattaactcaccctcgttcctctgatacaacatccgtagctagtaaagtttaatgagtgattgaagtcggcgtctatgttgcat |
120 |
Q |
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| T |
32391204 |
agcctgacatggcagaaattaagtcaccctcgttcctctgatgcaacatccgtagctagtaaagtttaatgagtgattgaagtcggcgtctatgttgcat |
32391303 |
T |
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| Q |
121 |
ttcacgcaaccttgcagaggtggttcttgaatgtcgctgttgtttattctattactgtgcacagcagattgcacgatgtttgtgttggagaacctttgtg |
220 |
Q |
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| T |
32391304 |
ttcacgcaaccttgcagaggtggttcttgaatgtcgctgttgtttattctattactgtgcacagcagattgcacgctgtttgtgttggagaacctttgtg |
32391403 |
T |
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| Q |
221 |
ttataaggttccgtaacacaaacagcgtgcaatctgctgtgcacactaacagcacgaacagtgtgaaatgcaacgtgcccaacattgcatactctctg |
318 |
Q |
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| T |
32391404 |
ttataaggttccgtaacac--acagcgtgcaatctgctgtgcacactaacagcacgaacaatgtgaaatgcaacgtgcccaacattgcataatctctg |
32391499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 32391389 - 32391359
Alignment:
| Q |
235 |
aacacaaacagcgtgcaatctgctgtgcaca |
265 |
Q |
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| T |
32391389 |
aacacaaacagcgtgcaatctgctgtgcaca |
32391359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 26160693 - 26160815
Alignment:
| Q |
21 |
agcctgacatggcagaaattaactcaccctc-gttcctctgatacaacatccgtagctagtaaagtttaatgagtgattgaagtcggcgtctatgttgca |
119 |
Q |
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| T |
26160693 |
agcctgacatggccgaaacaaactcaccctccgctgctctgatgcaacaaccgtagctagtaaagtttaatgagtgat-------------tatgttgca |
26160779 |
T |
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| Q |
120 |
tttcacgcaaccttgcagaggtggttcttgaatgtc |
155 |
Q |
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| T |
26160780 |
tttcacgcaaccttgcagaggtggttcctgaatgtc |
26160815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 26160819 - 26160869
Alignment:
| Q |
256 |
gctgtgcacactaacagcacgaacagtgtgaaatgcaacgtgcccaacatt |
306 |
Q |
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| T |
26160819 |
gctgtgcacagtaacagcacgaaccgcgtgaaatgcaacgtgcacaacatt |
26160869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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