View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16739_high_14 (Length: 256)
Name: NF16739_high_14
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16739_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 24197914 - 24198147
Alignment:
| Q |
8 |
taatttcaattaatcatcaatgataattttaaaacatggaacaacttgtttaattcatcattcacgcatcaatttttgtaattggtgatgaatattccct |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24197914 |
taatttcaattaatcatcaatgataattttaaaacatggaacagcttgtttaattcatcattcacgcatcaatttttgtaattggtgatgaatattccct |
24198013 |
T |
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| Q |
108 |
taaacacatcaaaacattgttattttcttcatcactgtcaaaatcaattgctacggttgagaagacatcaaacagtagtcgcggttgagaagaagaaacc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24198014 |
taaacacatcaaaacattgttattttcttcatcactgtcaaaatcaattgctacggttgagaagacatcaaacagtagtcgcggttgagaagaagaaact |
24198113 |
T |
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| Q |
208 |
aatttattttaaaagatgagaagaacaaactaat |
241 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
24198114 |
aatttatttcaaaagatgagaagaacaaactaat |
24198147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 43449698 - 43449931
Alignment:
| Q |
8 |
taatttcaattaatcatcaatgataattttaaaacatggaacaacttgtttaattcatcattcacgcatcaatttttgtaattggtgatgaatattccct |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43449698 |
taatatcaattaatcatcaatgataattttaaaacatggaacagcttgtttaattcatcattcacgcatcaatttttgtaattggtgatgaatattccct |
43449797 |
T |
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| Q |
108 |
taaacacatcaaaacattgttattttcttcatcactgtcaaaatcaattgctacggttgagaagacatcaaacagtagtcgcggttgagaagaagaaacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43449798 |
taaacacatcaaaacattgttattttcttcatcattgtcaaaatcaattgctacggttgagaagacatcaaacagtagtcgcggttgagaagaataaact |
43449897 |
T |
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| Q |
208 |
aatttattttaaaagatgagaagaacaaactaat |
241 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
43449898 |
aatttatttcaaaagatgagaagaacaaactaat |
43449931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 32160617 - 32160661
Alignment:
| Q |
62 |
tcatcattcacgcatcaatttttgtaattggtgatgaatattccc |
106 |
Q |
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|||| |||||| ||||||||||||||||| | ||||||||||||| |
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| T |
32160617 |
tcataattcacacatcaatttttgtaattagggatgaatattccc |
32160661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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