View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16739_high_15 (Length: 242)
Name: NF16739_high_15
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16739_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15180310 - 15180530
Alignment:
| Q |
1 |
aaagttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcggagacaaaggcgaaagacaattttcgggaactg |
100 |
Q |
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| T |
15180310 |
aaagttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggtggagacaaaggcgaaagacaattttctggaactg |
15180409 |
T |
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| Q |
101 |
caattgatcttgctagcaacgacaatgctatcactgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagctaacataatcacagg |
200 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15180410 |
caattgatcttgctagcaatgacaatgctatcaccgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagctaacataatcacagg |
15180509 |
T |
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| Q |
201 |
tgtgcattgttataacaaagc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
15180510 |
tgtgcattgttataacaaagc |
15180530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 38859568 - 38859363
Alignment:
| Q |
16 |
catgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcggagacaaaggcgaaagacaattttcgggaactgcaattgatcttgcta |
115 |
Q |
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||||| || |||||||||||| ||||||||||||||||||||||||| ||||| ||| | ||||| | | | ||| || | ||||||||||||| |
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| T |
38859568 |
catgagacattcatatcaagttgttttcttggacaacactcaacagttggcggtgaccatggcgagaaggactattccggggtcggtattgatcttgcta |
38859469 |
T |
|
| Q |
116 |
gcaacgacaatgctatcactgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagctaacataatcacaggtgtgcattgttataa |
215 |
Q |
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| T |
38859468 |
gtaatgacaatgcaatcactgatgtcgcgattttctcggcagccactggtattgtgctaagaggtcaggctaacattctatcaggggtgcattgttataa |
38859369 |
T |
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| Q |
216 |
caaagc |
221 |
Q |
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|||||| |
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| T |
38859368 |
caaagc |
38859363 |
T |
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