View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16739_high_2 (Length: 703)

Name: NF16739_high_2
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16739_high_2
NF16739_high_2
[»] chr3 (1 HSPs)
chr3 (16-688)||(54236252-54236922)


Alignment Details
Target: chr3 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 16 - 688
Target Start/End: Original strand, 54236252 - 54236922
Alignment:
Q  16 tgaatgatgccgttgtatattttcagcaagcactgcagggtcgttgttgagaaaagggaaatttaattatattgcttgttattataaagtttgtaaactg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  54236252 tgaatgatgccgttgtatattttcagcaagcactgcagggtcgttgttgagaaaagggaaatttaattatattg-ttattat-ataaagtttgtaaactg 54236349  T
Q  116 taattgtattgaaaaagaagagggaataagattagtggatcggtaacatgaatattttaattggtgtacagtgtaaaaaggttatataaagtatgggaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54236350 taattgtattgaaaaagaagagggaataagattagtggatcggtaacatgaatattt-aattggtgtacagtgtaaaaaggttatataaagtatgggaat 54236448  T
Q  216 tggatatctatccaccaccacagtcaagcaaagctattttgattctctgatcggaaaatatgaattgctcgcaaattacagccatcctattacggcgttg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  54236449 tggatatctatccaccaccacagtcaagcaaagctattttgattctctgatcggaaaatatgaattgctcgcaaattacagccatcctattacggtgttg 54236548  T
Q  316 tagatttgaccaatttgattttggtaagatacttcatgtttttggtctatttcatttctaatttaaatcaaaatacagaccatttaaagggtatcaaaat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54236549 tagatttgaccaatttgattttggtaagatacttcatgtttttggtctatttcatttctaatttaaatcaaaatacagaccatttaaagggtatcaaaat 54236648  T
Q  416 aagatgatcaagatcttttgactaatcccctaaagaaatctttagattagggatgtcaaaaagattcttacctatagataaaatctatcaaagataccgg 515  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54236649 aagatgatcaagatcttttgactaaacccctaaagaaatctttagattagggatgtcaaaaagattcttacctatagataaaatctatcaaagataccgg 54236748  T
Q  516 gcaaatactttaatatacagatgttatttagtaaaggatgtcctaaatttagagagtgacttggtgatttaggaagatattattttctcatagtaccctc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54236749 gcaaatactttaatatacagatgttatttagtaaaggatgtcctaaatttagagagtgacttggtaatttaggaagatattattttctcatagtaccctc 54236848  T
Q  616 gtcctttaaatcggtg-aatattaaacaaaacactgatcatttgttaaacaaatcaataatagctagtaatttt 688  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||    
T  54236849 gtcctttaaatcggtgaaatattaaacaaaacactgatcatttgttaaccaaatcaatagtagatagtaatttt 54236922  T

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