View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16739_high_5 (Length: 489)
Name: NF16739_high_5
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16739_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 33036436 - 33036909
Alignment:
| Q |
1 |
atgggagaagttgtacttatagggatacattcaaatgatacactccttgttgttcttgtttttcctcttgccatctggttcggttagttacaaataaata |
100 |
Q |
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| T |
33036436 |
atgggagaagttgtacttatagtgatacattcaaatgatacactccttgttgttcttgtttttcctcttgccatctggttcggttagttacaaataaata |
33036535 |
T |
|
| Q |
101 |
atgtttgtttatagtaattgattttgagataaacaaatgcacctatccaattcacataagctctttattagtaatagcatcccattaatgatttgatagt |
200 |
Q |
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| T |
33036536 |
atgtttgtttatagtaattgattttgagataaacaaatgcacctatctaattcacataagctttttattagtaatagcatcccattaatgatttgatagt |
33036635 |
T |
|
| Q |
201 |
atgtatgtgctaagacagtggaacatgttggtgcttggttctttcaagttatggaaacgaggttgtccctcaaacaatgcagggtgcatagttttgtgct |
300 |
Q |
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| T |
33036636 |
atgtatgtgctaagacagtggaacatgttggtgcttggttctttcaagttatggaaacgaggttgtccctcaaacaatgcagggtgcatagttttgtgct |
33036735 |
T |
|
| Q |
301 |
acatgtaggaatcctagaagtgatgcttcttgagatgatgtaggaggcacgatcctttactgcactatactctacgacgaggtggtcacctcagactctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33036736 |
acatgtaggaatcctagaagtgatgcttcttgagatgaggtaggaggcacgatcctttactgcactatactctacgacgaggtggtcacctcagactctc |
33036835 |
T |
|
| Q |
401 |
ttaatgagcttgcttgttggacaatcatgaggataattgggtcagatgtattaggttcatggcattgcaaatag |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33036836 |
ttaatgagcttgcttgttggacaatcatgaggataattgggtcagatgtattaggttcatggcattgcaaatag |
33036909 |
T |
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