View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16739_low_10 (Length: 302)
Name: NF16739_low_10
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16739_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 43587380 - 43587687
Alignment:
| Q |
1 |
aatccaccaatgatctagcaatgtgaaaaattaaaccaaaattaaac-------gaaaaacaaggactaagcaccagccctctacacacacgcaaccaaa |
93 |
Q |
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| T |
43587380 |
aatccaccaatgatctagcaatgtgaaaaattaaaccaaaattaaacaaaaaccgaaaaacaagaactaagcatcagccctctacacacacgcaaccaaa |
43587479 |
T |
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| Q |
94 |
tcagcagccaagaaaagctaaaaaatcctcaccagaaggcaaaaaacataacaggaagcttaaaaaatgcagcaacagccctcgatagcagacgacaacc |
193 |
Q |
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| T |
43587480 |
tcagcagccaagaaaagctaaaa-atcctcaccagaaggcaaaaaacataacaggaagcttaaaaaacgcagcaacagccctcgatagcagacgaaaacc |
43587578 |
T |
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| Q |
194 |
agaaaccgcatacaaaatccacaatttaatcaagagaatgttacaatcaaaaggacagcagacataaacacctctcaacaaacagcatcaacagcctaat |
293 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43587579 |
agaaaccgcatacaaaatccacaatttaatcaagaaaatgttacaatcagaaggacagcagacataaacacctctcaacaaacaccatcaacagcctaat |
43587678 |
T |
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| Q |
294 |
ctgcactag |
302 |
Q |
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| T |
43587679 |
ccgcactag |
43587687 |
T |
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