View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16739_low_11 (Length: 291)
Name: NF16739_low_11
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16739_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 47074010 - 47074276
Alignment:
| Q |
11 |
caaaggaccattgtactnnnnnnncagaagagaggttctcacctcagagctagttagactcccattcagattaaaacaatgagatacgatacctccgggt |
110 |
Q |
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| T |
47074010 |
caaaggaccattgtactaaaaaaacagaagagaggttctcacctcagagctagttagactcccattcagattaaaacaatgagatacgatacctccaggt |
47074109 |
T |
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| Q |
111 |
atctttcctccaaatccccaagcaggaaaccgcttatcagaatcatagaactgaataacttctccaacctccattatagcctacataaattgtagggtgt |
210 |
Q |
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| T |
47074110 |
atctttcctccaaatccccaagcaggaaaccgcttatcagaatcatagaactgtataacttctccaacctccattatagcctacataaattgtagggtgt |
47074209 |
T |
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| Q |
211 |
tcattaggcaagatagtgataatatcacaccaagttactcagaaccaaaaaagaagttaaaaaattg |
277 |
Q |
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| T |
47074210 |
tcattaggcaagatagtgataatatcacaccaagttactcagaaccaaaaaagaagttaaaaaattg |
47074276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 47055601 - 47055761
Alignment:
| Q |
72 |
ccattcagattaaaacaatgagatacgatacctccgggtatctttcctccaaatccccaagcaggaaaccgcttatcagaatcatagaactgaataactt |
171 |
Q |
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| T |
47055601 |
ccattcagattaaaacagtgagatacagaaccaccgtgtacatttcctccaaatccccaagcaggaaacagcttatcagaatcatagaactgaataactt |
47055700 |
T |
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| Q |
172 |
ctccaacctccattatagcctacataaattgtagggtgttcattaggcaagatagtgataa |
232 |
Q |
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| T |
47055701 |
ctccaacctccattataacctacacaaattttactatgttcattaggcaagacactgataa |
47055761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 18231316 - 18231161
Alignment:
| Q |
46 |
ttctcacctcagagctagttagactcccattcagattaaaacaatgagatacgatacctccgggtatctttcctccaaatccccaagcaggaaaccgctt |
145 |
Q |
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|||||||||| ||||||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18231316 |
ttctcacctcggagctagttggactcccattgagattaaaacaatgagatatggtacctccgggtatctttcctccaaatccccaagcaggaaacagctt |
18231217 |
T |
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| Q |
146 |
atcagaatcatagaactgaataacttctccaacctccattatagcctacataaatt |
201 |
Q |
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| T |
18231216 |
atcagaatcgtagaactgaataacttctccaacctccataatagcctacataaatt |
18231161 |
T |
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