View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16739_low_18 (Length: 235)
Name: NF16739_low_18
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16739_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 13049788 - 13049622
Alignment:
| Q |
2 |
actacaatttaaaactcataacaagggaannnnnnnngctaacc-accatagttatagggcctttggctaccattgcatcttctgcagtatcccccatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| || ||||| ||||| |||||||||||||||||||| ||||| |||||||| ||| |
|
|
| T |
13049788 |
actacaatttaaaactcataacaagggtatattttttgctaacctactatagtcatagg-cctttggctaccattgcatcctctgcggtatcccc-ataa |
13049691 |
T |
|
| Q |
101 |
atttatatcctttgaacttgttatgaaattaatccttaagttggtaatgagacttgtgattttttatac |
169 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
13049690 |
atttacatcctttgaatttgttatgaaattaatccttaagttggtaataagacgtgtgattttatatac |
13049622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University