View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16739_low_21 (Length: 215)
Name: NF16739_low_21
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16739_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 17734663 - 17734464
Alignment:
| Q |
9 |
gagcacagaagaaacaagctgagagcataaggatttgagatcatcgatggattcagactggaggaagaagagaagttggttttgttcgggaccctcggag |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
17734663 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
17734564 |
T |
|
| Q |
109 |
ccggtagtgatcataatgagtacggtgttgcgcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
208 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
17734563 |
ccggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgt |
17734464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 17743903 - 17743704
Alignment:
| Q |
9 |
gagcacagaagaaacaagctgagagcataaggatttgagatcatcgatggattcagactggaggaagaagagaagttggttttgttcgggaccctcggag |
108 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
17743903 |
gagcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
17743804 |
T |
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| Q |
109 |
ccggtagtgatcataatgagtacggtgttgcgcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
208 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
17743803 |
ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgt |
17743704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 16720679 - 16720480
Alignment:
| Q |
9 |
gagcacagaagaaacaagctgagagcataaggatttgagatcatcgatggattcagactggaggaagaagagaagttggttttgttcgggaccctcggag |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||| ||||| ||||||||||||| |
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| T |
16720679 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggag |
16720580 |
T |
|
| Q |
109 |
ccggtagtgatcataatgagtacggtgttgcgcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
208 |
Q |
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||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
16720579 |
ccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt |
16720480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 17697693 - 17697494
Alignment:
| Q |
9 |
gagcacagaagaaacaagctgagagcataaggatttgagatcatcgatggattcagactggaggaagaagagaagttggttttgttcgggaccctcggag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||| ||||| ||||||||||||| |
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| T |
17697693 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggag |
17697594 |
T |
|
| Q |
109 |
ccggtagtgatcataatgagtacggtgttgcgcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
208 |
Q |
| |
|
||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
17697593 |
ccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt |
17697494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 17716612 - 17716413
Alignment:
| Q |
9 |
gagcacagaagaaacaagctgagagcataaggatttgagatcatcgatggattcagactggaggaagaagagaagttggttttgttcgggaccctcggag |
108 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||||||| | || |||||| |||||||||||| |||||||||| ||||| ||||||||||||| |
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| T |
17716612 |
gagcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggag |
17716513 |
T |
|
| Q |
109 |
ccggtagtgatcataatgagtacggtgttgcgcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
208 |
Q |
| |
|
||||||| ||||||| |||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
17716512 |
ccggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgt |
17716413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 16729552 - 16729353
Alignment:
| Q |
9 |
gagcacagaagaaacaagctgagagcataaggatttgagatcatcgatggattcagactggaggaagaagagaagttggttttgttcgggaccctcggag |
108 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||||||||| || |||||||||||||||||| |||||||||| ||||| |||||||| |||| |
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| T |
16729552 |
gagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggag |
16729453 |
T |
|
| Q |
109 |
ccggtagtgatcataatgagtacggtgttgcgcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
208 |
Q |
| |
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| ||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |||||| |
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| T |
16729452 |
ctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt |
16729353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 17706624 - 17706425
Alignment:
| Q |
9 |
gagcacagaagaaacaagctgagagcataaggatttgagatcatcgatggattcagactggaggaagaagagaagttggttttgttcgggaccctcggag |
108 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||||||||| || |||||||||||||||||| |||||||||| ||||| |||||||| |||| |
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| T |
17706624 |
gagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggag |
17706525 |
T |
|
| Q |
109 |
ccggtagtgatcataatgagtacggtgttgcgcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
208 |
Q |
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| ||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |||||| |
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| T |
17706524 |
ctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt |
17706425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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