View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16739_low_22 (Length: 210)

Name: NF16739_low_22
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16739_low_22
NF16739_low_22
[»] chr2 (7 HSPs)
chr2 (17-197)||(2326084-2326264)
chr2 (26-189)||(2329808-2329971)
chr2 (17-189)||(2320230-2320402)
chr2 (17-195)||(2292910-2293088)
chr2 (17-189)||(2302529-2302701)
chr2 (17-189)||(2309241-2309413)
chr2 (20-189)||(2350102-2350271)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 2326084 - 2326264
Alignment:
Q  17 cacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326084 cacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca 2326183  T
Q  117 atcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2326184 atcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctc 2326264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 2329808 - 2329971
Alignment:
Q  26 atcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaata 125  Q
    ||||||| |||||| |||||||| |||||||||||  |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  2329808 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 2329907  T
Q  126 tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 189  Q
    |||| ||  |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  2329908 tcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaa 2329971  T

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Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 2320230 - 2320402
Alignment:
Q  17 cacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca 116  Q
    |||||||||||||||| || | | |||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320230 cacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca 2320329  T
Q  117 atcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 189  Q
     | |  ||||||| ||  |||||||||||| ||||  ||||| ||||||||| ||||| | ||||||||||||    
T  2320330 ctgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa 2320402  T

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Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 2292910 - 2293088
Alignment:
Q  17 cacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca 116  Q
    |||||||||||||||| || | | |||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2292910 cacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca 2293009  T
Q  117 atcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatc 195  Q
     | |  ||||||| ||  |||||||||||| |||   ||||| | ||||||||||||| | |||||||||||| |||||    
T  2293010 ctgtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatc 2293088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 2302529 - 2302701
Alignment:
Q  17 cacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca 116  Q
    |||||||||||| ||| || ||| || | |||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2302529 cacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca 2302628  T
Q  117 atcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 189  Q
     |||  | ||||| ||  |||||||||||| ||||   |||| ||||||||||||||| | ||||||||||||    
T  2302629 ctctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaa 2302701  T

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Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 2309241 - 2309413
Alignment:
Q  17 cacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca 116  Q
    |||||||||||||||| || | | |||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2309241 cacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatca 2309340  T
Q  117 atcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 189  Q
     | |  ||||||| ||   ||||||||||| ||||  ||||| ||||||||| ||||| | ||||||||||||    
T  2309341 ttgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa 2309413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 2350102 - 2350271
Alignment:
Q  20 atccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatc 119  Q
    |||||||| |||| ||| || | |||||||||||||||||  |||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||| ||    
T  2350102 atccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 2350201  T
Q  120 ttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 189  Q
    | || ||| | | | |||||||||||| ||||||||||| | |||| |||||||||||||||||||||||    
T  2350202 tcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaa 2350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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