View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16739_low_3 (Length: 642)
Name: NF16739_low_3
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16739_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 12 - 620
Target Start/End: Original strand, 11859064 - 11859678
Alignment:
| Q |
12 |
gagatgaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaa |
111 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11859064 |
gagaagaaggagattatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaa |
11859163 |
T |
|
| Q |
112 |
caaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggccctcatcaccaatttgatgttga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
11859164 |
caaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggtcttcatcaccaatttgatgttga |
11859263 |
T |
|
| Q |
212 |
atccatagtaaaatgtgttactgatcagtctgatcatgagaaacgcatcttacttgttatagatgatttgcgaattgagattaagaatgatgatctcaag |
311 |
Q |
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||||||||||||| | |||||||||| || || |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| || |
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| T |
11859264 |
atccatagtaaaaagcgttactgatcggtatgttcataagaaacgcgtcttacttgttatagatgatttgcgaattgagattgagaatggtgatctcgag |
11859363 |
T |
|
| Q |
312 |
aagttgcagaagaaattaatggaggctgctggcggaaggactgataccgcgatacttgttacaacaacacgaagcaaccatgttgccaacgacattgcta |
411 |
Q |
| |
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|||||||||||||||||| | ||||||| || |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | |||||| |
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| T |
11859364 |
aagttgcagaagaaattagcgcaggctgcaggtggaaggactgataccgtcatacttgttacaacaacacgaagcagccatgttgccaacaaaattgctg |
11859463 |
T |
|
| Q |
412 |
ctagacttgttttgaaattggaggagcttaatcaggaggaatcttggtcattgtttcagcagattcatggaccaattacttcagccaaaaaagaacaaag |
511 |
Q |
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|||||| ||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
11859464 |
ctagacatgttttgaagttgcaggggcttaatcaagaggaatcttggtcattgtttcagcagattcatggaccaattacttcaaccaaaaaagtgcaaag |
11859563 |
T |
|
| Q |
512 |
caccattgaacc------tgaacatgaacgggagatcgtggagggttgtggtggagttcctcttttgattgtgatcgtagcgacgttgatgatgaagcaa |
605 |
Q |
| |
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||||| |||||| ||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| | | |||| ||||||| |
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| T |
11859564 |
caccactgaacccgaacgtgaacctgaacgggagattgtggaaggttgtgctggagttcctcttttgattgtgatcgtagcgatggtaatgaagaagcaa |
11859663 |
T |
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| Q |
606 |
agtggtggtggtggt |
620 |
Q |
| |
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||||||||||||||| |
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| T |
11859664 |
agtggtggtggtggt |
11859678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 25 - 482
Target Start/End: Original strand, 12037875 - 12038317
Alignment:
| Q |
25 |
ttatagataaactgctgaagatgaacaaggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaacaaaacttgctcg |
124 |
Q |
| |
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|||||||||||||| |||| |||| || |||| ||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12037875 |
ttatagataaactggtgaacctgaagaacactgatgctgctgttcctgttgttattgttattgttggtgttcctggaattggcaaaacaaaacttgctca |
12037974 |
T |
|
| Q |
125 |
tctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggccctcatcaccaatttgatgttgaatccatagtaaaa |
224 |
Q |
| |
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|||||||||||| |||||||||||| || || || ||| || ||| ||||||||||||| ||| |||||||||||||| |||| |||| |
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| T |
12037975 |
tctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaaccaatttggatcaa----------aacc--tttgatgttgaatctatagcaaaa |
12038062 |
T |
|
| Q |
225 |
tgtgttactgatcagtctgatcatgagaaacgcatcttacttgttatagatgatttgcgaattgagatta---agaatgatgatctcaagaagttgcaga |
321 |
Q |
| |
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||||| | | ||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||| || |||| |||| |||||||||||| |
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| T |
12038063 |
agtgttgccg---agtctcatcatgagaaacgcctcttacttgttatagatgatttgagatttgagattaatgagcctgattatcttgagaagttgcaga |
12038159 |
T |
|
| Q |
322 |
agaaattaatggaggctgctggcggaaggactgataccgcgatacttgttacaacaacacgaagcaaccatgttgccaacgacattgctactagacttgt |
421 |
Q |
| |
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||||||||| || |||| ||| || | ||||||| || ||||| || || ||||| || |||||||| ||| || |||||||| || ||| ||| |
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| T |
12038160 |
agaaattaactgaagctgttggtggccgtgctgatacggccatactcatt---actacacgtagtaaccatgtcgccgacaacattgctgctggacatgt |
12038256 |
T |
|
| Q |
422 |
tttgaaattggaggagcttaatcaggaggaatcttggtcattgtttcagcagattcatgga |
482 |
Q |
| |
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|||||| ||| ||| ||||||||| ||||| |||||||| |||||| || | ||||||||| |
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| T |
12038257 |
tttgaagttgcaggggcttaatcaagaggattcttggtccttgtttgaggaaattcatgga |
12038317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 260 - 523
Target Start/End: Original strand, 11827171 - 11827434
Alignment:
| Q |
260 |
cttacttgttatagatgatttgcgaattgagattaagaa---tgatgatctcaagaagttgcagaagaaattaatggaggctgctggcggaaggactgat |
356 |
Q |
| |
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||||||| |||||||||||||| |||||| |||||| || |||||| ||| ||||||| ||||||||||| ||||||| |||||| || | || || |
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| T |
11827171 |
cttacttattatagatgatttgagaattgcgattaataagcatgatgacctcgagaagttacagaagaaattgatggaggttgctggtggccgtaccaat |
11827270 |
T |
|
| Q |
357 |
accgcgatacttgttacaacaacacgaagcaaccatgttgccaacgacattgctactagacttgttttgaaattggaggagcttaatcaggaggaatctt |
456 |
Q |
| |
|
|||| |||||| |||| ||| | ||||||||||| |||||| | |||| | ||| | ||||||||| ||| ||| ||||||||| ||||||||| |
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| T |
11827271 |
accgtgatactcattaccacat---gtagcaaccatgtcgccaacaatattggtgctacatatgttttgaagttgcaggggcttaatcaaaaggaatctt |
11827367 |
T |
|
| Q |
457 |
ggtcattgtttcagcagattcatggaccaattacttcagccaaaaaagaacaaagcaccattgaacc |
523 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
11827368 |
ggtcattgtttcagcagatttatggaccaattacttcaaccaaaaaagcacaaagcaccatcgaacc |
11827434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 11826945 - 11827037
Alignment:
| Q |
61 |
ctgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
153 |
Q |
| |
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||||||||||| || | |||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
11826945 |
ctgctgttcctgtttttattgctattgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaag |
11827037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 11903379 - 11903281
Alignment:
| Q |
84 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
182 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| |||||||||| || ||||||| || ||||||||||| |
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|
| T |
11903379 |
attgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
11903281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 11730826 - 11730895
Alignment:
| Q |
84 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
153 |
Q |
| |
|
|||||||||||||| ||||| || || ||||||||||| || || ||||| || |||||||||||||||| |
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| T |
11730826 |
attgttggtgttccgggaatagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaag |
11730895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 541 - 618
Target Start/End: Complemental strand, 11902943 - 11902866
Alignment:
| Q |
541 |
tcgtggagggttgtggtggagttcctcttttgattgtgatcgtagcgacgttgatgatgaagcaaagtggtggtggtg |
618 |
Q |
| |
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||||| ||| |||||||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| |||||||| |
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| T |
11902943 |
tcgtgaaggattgtggtggagtccctcttgcgattgtgaccgtagcaatgttgatgaagaaccaaagtgctggtggtg |
11902866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 11730382 - 11730451
Alignment:
| Q |
84 |
attgttggtgttcctggaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
153 |
Q |
| |
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|||||||||||| | ||||| || || ||||||||||| ||||| ||||| | |||||||||||||||| |
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| T |
11730382 |
attgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaag |
11730451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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