View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16739_low_4 (Length: 561)
Name: NF16739_low_4
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16739_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Original strand, 11859152 - 11859678
Alignment:
| Q |
19 |
gaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggccctcatcacca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
11859152 |
gaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggtcttcatcacca |
11859251 |
T |
|
| Q |
119 |
atttgatgttgaatccatagtaaaatgtgttactgatcagtctgatcatgagaaacgcatcttacttgttatagatgatttgcgaattgagattaagaat |
218 |
Q |
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| T |
11859252 |
atttgatgttgaatccatagtaaaaagcgttactgatcggtatgttcataagaaacgcgtcttacttgttatagatgatttgcgaattgagattgagaat |
11859351 |
T |
|
| Q |
219 |
gatgatctcaagaagttgcagaagaaattaatggaggctgctggcggaaggactgataccgcgatacttgttacaacaacacgaagcaaccatgttgcca |
318 |
Q |
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| T |
11859352 |
ggtgatctcgagaagttgcagaagaaattagcgcaggctgcaggtggaaggactgataccgtcatacttgttacaacaacacgaagcagccatgttgcca |
11859451 |
T |
|
| Q |
319 |
acgacattgctactagacttgttttgaaattggaggagcttaatcaggaggaatcttggtcattgtttcagcagattcatggaccaattacttcagccaa |
418 |
Q |
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| T |
11859452 |
acaaaattgctgctagacatgttttgaagttgcaggggcttaatcaagaggaatcttggtcattgtttcagcagattcatggaccaattacttcaaccaa |
11859551 |
T |
|
| Q |
419 |
aaaagaacaaagcaccattgaacc------tgaacatgaacgggagatcgtggagggttgtggtggagttcctcttttgattgtgatcgtagcgacgttg |
512 |
Q |
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| T |
11859552 |
aaaagtgcaaagcaccactgaacccgaacgtgaacctgaacgggagattgtggaaggttgtgctggagttcctcttttgattgtgatcgtagcgatggta |
11859651 |
T |
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| Q |
513 |
atgatgaagcaaagtggtggtggtggt |
539 |
Q |
| |
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| T |
11859652 |
atgaagaagcaaagtggtggtggtggt |
11859678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 179 - 442
Target Start/End: Original strand, 11827171 - 11827434
Alignment:
| Q |
179 |
cttacttgttatagatgatttgcgaattgagattaagaa---tgatgatctcaagaagttgcagaagaaattaatggaggctgctggcggaaggactgat |
275 |
Q |
| |
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||||||| |||||||||||||| |||||| |||||| || |||||| ||| ||||||| ||||||||||| ||||||| |||||| || | || || |
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| T |
11827171 |
cttacttattatagatgatttgagaattgcgattaataagcatgatgacctcgagaagttacagaagaaattgatggaggttgctggtggccgtaccaat |
11827270 |
T |
|
| Q |
276 |
accgcgatacttgttacaacaacacgaagcaaccatgttgccaacgacattgctactagacttgttttgaaattggaggagcttaatcaggaggaatctt |
375 |
Q |
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| T |
11827271 |
accgtgatactcattaccacat---gtagcaaccatgtcgccaacaatattggtgctacatatgttttgaagttgcaggggcttaatcaaaaggaatctt |
11827367 |
T |
|
| Q |
376 |
ggtcattgtttcagcagattcatggaccaattacttcagccaaaaaagaacaaagcaccattgaacc |
442 |
Q |
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| T |
11827368 |
ggtcattgtttcagcagatttatggaccaattacttcaaccaaaaaagcacaaagcaccatcgaacc |
11827434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 12037950 - 12038317
Alignment:
| Q |
19 |
gaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggccctcatcacca |
118 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |||||||||||| || || || ||| || ||| ||||||||||||| ||| |
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| T |
12037950 |
gaattggcaaaacaaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaaccaatttggatcaa----------aacc- |
12038038 |
T |
|
| Q |
119 |
atttgatgttgaatccatagtaaaatgtgttactgatcagtctgatcatgagaaacgcatcttacttgttatagatgatttgcgaattgagatta---ag |
215 |
Q |
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|||||||||||||| |||| |||| ||||| | | ||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||| || |
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| T |
12038039 |
-tttgatgttgaatctatagcaaaaagtgttgccg---agtctcatcatgagaaacgcctcttacttgttatagatgatttgagatttgagattaatgag |
12038134 |
T |
|
| Q |
216 |
aatgatgatctcaagaagttgcagaagaaattaatggaggctgctggcggaaggactgataccgcgatacttgttacaacaacacgaagcaaccatgttg |
315 |
Q |
| |
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|||| |||| ||||||||||||||||||||| || |||| ||| || | ||||||| || ||||| || || ||||| || |||||||| | |
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| T |
12038135 |
cctgattatcttgagaagttgcagaagaaattaactgaagctgttggtggccgtgctgatacggccatactcatt---actacacgtagtaaccatgtcg |
12038231 |
T |
|
| Q |
316 |
ccaacgacattgctactagacttgttttgaaattggaggagcttaatcaggaggaatcttggtcattgtttcagcagattcatgga |
401 |
Q |
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| T |
12038232 |
ccgacaacattgctgctggacatgttttgaagttgcaggggcttaatcaagaggattcttggtccttgtttgaggaaattcatgga |
12038317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 11826984 - 11827037
Alignment:
| Q |
19 |
gaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaag |
72 |
Q |
| |
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||||||| |||||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
11826984 |
gaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaag |
11827037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 537
Target Start/End: Complemental strand, 11902943 - 11902866
Alignment:
| Q |
460 |
tcgtggagggttgtggtggagttcctcttttgattgtgatcgtagcgacgttgatgatgaagcaaagtggtggtggtg |
537 |
Q |
| |
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||||| ||| |||||||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| |||||||| |
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| T |
11902943 |
tcgtgaaggattgtggtggagtccctcttgcgattgtgaccgtagcaatgttgatgaagaaccaaagtgctggtggtg |
11902866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 11903363 - 11903281
Alignment:
| Q |
19 |
gaattggcaaaacaaaacttgctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatc |
101 |
Q |
| |
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||||||| |||||||||||||| |||| ||||| |||||||| |||||||||| || ||||||| || ||||||||||| |
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| T |
11903363 |
gaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaaccaatttggatc |
11903281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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