View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16739_low_7 (Length: 356)

Name: NF16739_low_7
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16739_low_7
NF16739_low_7
[»] chr2 (4 HSPs)
chr2 (1-341)||(43157219-43157559)
chr2 (1-341)||(38251983-38252323)
chr2 (251-328)||(38251920-38251996)
chr2 (251-328)||(43157546-43157622)
[»] chr1 (6 HSPs)
chr1 (49-341)||(11474691-11474983)
chr1 (49-341)||(11502731-11503023)
chr1 (1-297)||(28245191-28245487)
chr1 (251-328)||(11474970-11475046)
chr1 (251-328)||(11503010-11503086)
chr1 (1-48)||(11474543-11474590)
[»] chr6 (2 HSPs)
chr6 (1-297)||(10123418-10123714)
chr6 (1-297)||(19306846-19307142)
[»] chr5 (1 HSPs)
chr5 (1-297)||(25382699-25382994)
[»] chr7 (1 HSPs)
chr7 (5-296)||(22490433-22490723)
[»] chr4 (2 HSPs)
chr4 (102-296)||(48795375-48795572)
chr4 (1-109)||(48794526-48794634)


Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 43157219 - 43157559
Alignment:
Q  1 catgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43157219 catgggaactgtgtttttgctgttaaaaccacttagtaatgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 43157318  T
Q  101 tgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  43157319 tgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctg 43157418  T
Q  201 ccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43157419 ccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctag 43157518  T
Q  301 cataattttagagtgtgtaacaaatcttaattgtgttatag 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43157519 cataattttagagtgtgtaacaaatcttaattgtgttatag 43157559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 38252323 - 38251983
Alignment:
Q  1 catgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38252323 catgggaactgtgtttttgctgttaaaaccacttagtaatgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 38252224  T
Q  101 tgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctg 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  38252223 tgttatagcagcaactttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctg 38252124  T
Q  201 ccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38252123 ccatacattgactttgtattttgaatggaatatacaatattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctag 38252024  T
Q  301 cataattttagagtgtgtaacaaatcttaattgtgttatag 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38252023 cataattttagagtgtgtaacaaatcttaattgtgttatag 38251983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 38251996 - 38251920
Alignment:
Q  251 taattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38251996 taattgtgttatagcagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt 38251920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 43157546 - 43157622
Alignment:
Q  251 taattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43157546 taattgtgttatagcagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt 43157622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 49 - 341
Target Start/End: Original strand, 11474691 - 11474983
Alignment:
Q  49 ggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtt 148  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474691 ggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtt 11474790  T
Q  149 tgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctag 248  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474791 tgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctag 11474890  T
Q  249 cctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatcttaattgtgttatag 341  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474891 cttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatcttaattgtgttatag 11474983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 49 - 341
Target Start/End: Original strand, 11502731 - 11503023
Alignment:
Q  49 ggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtt 148  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11502731 ggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgttatagcagcaactttagttccccatgttgggtattttttggggtt 11502830  T
Q  149 tgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctag 248  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11502831 tgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctag 11502930  T
Q  249 cctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatcttaattgtgttatag 341  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11502931 cttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatcttaattgtgttatag 11503023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 28245487 - 28245191
Alignment:
Q  1 catgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28245487 catgggaactgtgtttttgctgttaaaaccacttagtaatgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 28245388  T
Q  101 tgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctg 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||| | |||||||||||||||||    
T  28245387 tgttatagcagcaactttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctgaattatagcagtagttttatagcagcttctg 28245288  T
Q  201 ccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28245287 ccatacattgactttgtattttgaatggaatatacaatattttgttagcctaattgtgttatagcagcctctgtcatttgtttgtttctatttatgc 28245191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 11474970 - 11475046
Alignment:
Q  251 taattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11474970 taattgtgttatagcagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt 11475046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 11503010 - 11503086
Alignment:
Q  251 taattgtgttatagcagcctctgtcatttgttcgtttctatttatgctagcataattttagagtgtgtaacaaatctt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11503010 taattgtgttatagcagcctctgtcatttgttcgtttctattt-tgctagcataattttagagtgtgtaacaaatctt 11503086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11474543 - 11474590
Alignment:
Q  1 catgggaactgtgtttttgctgttaaaaccacttagtagtgttatttt 48  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  11474543 catgggaactgtgtttttgctgttaaaaccacttagtaatgttatttt 11474590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 10123714 - 10123418
Alignment:
Q  1 catgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10123714 catgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 10123615  T
Q  101 tgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctg 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||       |||||||||||||||||| | |||||||||||||||||    
T  10123614 tgttatagcagcaactttagttccccatggtgggtattttttgcggtttgtcccatttttttcctgctgaattatagcagtagttttatagcagcttctg 10123515  T
Q  201 ccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 297  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10123514 ccatacattgactttgtattttgaatgcaatatacaatattttgttagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgc 10123418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 19307142 - 19306846
Alignment:
Q  1 catgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19307142 catgggaactgtgtttttgctgttaaaatcacttagtagtgttattttggatcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 19307043  T
Q  101 tgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctg 200  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||| | | |||||||||||||||    
T  19307042 tgttatagcagcagctttagttccccatggtgggtattttttggggtttgtcccatttttttcctgctgaattatagcagtagtgttatagcagcttctg 19306943  T
Q  201 ccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19306942 ccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgc 19306846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 25382699 - 25382994
Alignment:
Q  1 catgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  25382699 catgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctcctgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 25382798  T
Q  101 tgttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctg 200  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||| | | |||||||||| ||||    
T  25382799 tgttatagcagcagctttagttccccatggtgggtattttttggggtttgtccca-ttttttcctgctgaattatagcagtagtgttatagcagcctctg 25382897  T
Q  201 ccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25382898 ccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgattctatttatgc 25382994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 296
Target Start/End: Complemental strand, 22490723 - 22490433
Alignment:
Q  5 ggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagttgtt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  22490723 ggaactgtgtttttgctgttaaaaccacttagtagtgttattttggctgctgttagtgtgatgtcttaggattgtgcagccacacctctactaagttgtt 22490624  T
Q  105 atagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcacttttatagcagcttctgccat 204  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||||||       |||||||||||||||||| | | |||||||||||||||||||    
T  22490623 atagcagcagctttggttccccatggtgggtattttttggggtttgtccca-ttttttcctgctgaattatagcagtagtgttatagcagcttctgccat 22490525  T
Q  205 acattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22490524 acattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttgtatttatg 22490433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 296
Target Start/End: Original strand, 48795375 - 48795572
Alignment:
Q  102 gttatagcagcaactttagttccccatgttgggtattttttggggtttgtcccannnnnnncctgctgaattatagcagcactttt---atagcagcttc 198  Q
    ||||||||| ||  |||||||||||||| |||||||||||||||||||||||||       ||| |||||||||||||| | | ||   |||||||| ||    
T  48795375 gttatagcatcagatttagttccccatggtgggtattttttggggtttgtcccatttttttcctactgaattatagcagtagtgttgttatagcagcctc 48795474  T
Q  199 tgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttatagcagcctctgtcatttgttcgtttctatttatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  48795475 tgccatacattgactttgtattttgaatggaatatacaatattgtgctagcctaattgtgttataacaacctctgtcatttgttcgtttctatttatg 48795572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 48794526 - 48794634
Alignment:
Q  1 catgggaactgtgtttttgctgttaaaaccacttagtagtgttattttggatcttgttagtgtgctgtcttaggattgtgcagccacacctctgctaagt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  48794526 catgggaactgtgtttttgctattaaaaccacttagtagtgttattttggcttctgttaatgtgctgtcttaggattgtgcagccacgcctctgctaagt 48794625  T
Q  101 tgttatagc 109  Q
    |||||||||    
T  48794626 tgttatagc 48794634  T

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