View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16739_low_9 (Length: 345)
Name: NF16739_low_9
Description: NF16739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16739_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 45641506 - 45641185
Alignment:
| Q |
20 |
aaacaccccacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaatgattca |
119 |
Q |
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| T |
45641506 |
aaacacccaacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaatgattca |
45641407 |
T |
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| Q |
120 |
atatgtggattgcattctttggaacaaaaatcattcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcactaccagttg |
219 |
Q |
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| T |
45641406 |
atatgtggattgcattctttggaacaaaaatcattcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcactactagttg |
45641307 |
T |
|
| Q |
220 |
acccattagggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcaccttgaataat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45641306 |
acccattagggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcaccttgaataat |
45641207 |
T |
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| Q |
320 |
caccaccttacctatgctactc |
341 |
Q |
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||||||||||||| |||||||| |
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| T |
45641206 |
caccaccttacctctgctactc |
45641185 |
T |
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