View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16740_high_2 (Length: 453)
Name: NF16740_high_2
Description: NF16740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16740_high_2 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0702 (1 HSPs) |
| | |
|
| [»] scaffold1779 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 18343546 - 18343127
Alignment:
| Q |
19 |
gaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343546 |
gaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaat |
18343447 |
T |
|
| Q |
119 |
agaagcagggcgacgggcgatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaa |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18343446 |
agaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacctgttacagtaagacctaccgaa |
18343347 |
T |
|
| Q |
219 |
acgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18343346 |
acgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggggtcccagaaaatatag |
18343247 |
T |
|
| Q |
319 |
ctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343246 |
ctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaa- |
18343148 |
T |
|
| Q |
419 |
aaaatggtaattgttggtttc |
439 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
18343147 |
aaaatggtaattgttggtttc |
18343127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 22101625 - 22101579
Alignment:
| Q |
326 |
ggctatttcaatagcggcatccaaaatgcctatacgaactcaattca |
372 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22101625 |
ggctatttcaatagcggcatccaaaatgtctatacgaactcaattca |
22101579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 163823 - 164233
Alignment:
| Q |
19 |
gaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
163823 |
gaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcgaaaaatatgttctttaggcacttgagcccgcttggatcacatctagacaaat |
163922 |
T |
|
| Q |
119 |
agaagcagggcgacgggcgatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaa |
218 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
163923 |
agaagtagggcgatgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtatgcatatttccagacaaacctgttacattaagatctaccgaa |
164022 |
T |
|
| Q |
219 |
acgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
164023 |
acgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccgacaaaatactttatgaaatgggcggggtcccagaaaatatag |
164122 |
T |
|
| Q |
319 |
ctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
164123 |
ctagaaaggctatttcaatagcggcatccaaaatgcctataagaactcaattcattctttcagaataatcattagatcgaaataggtctttagtat-aaa |
164221 |
T |
|
| Q |
419 |
aaaatggtaatt |
430 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
164222 |
aaaatgataatt |
164233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 278266 - 277909
Alignment:
| Q |
18 |
agaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaa |
117 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||| |||| || || | |||||||||||| |||||||| |||||||||||||| | ||||| | |
|
|
| T |
278266 |
agaggaagaatgaaaggaaaatccttccgaggcaatcgtatttgttttggtagatatgctcttcaagcacttgaacccgcttggatcacggcgagacaga |
278167 |
T |
|
| Q |
118 |
tagaagcagggcgacgggcgatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccga |
217 |
Q |
| |
|
|||||||||| ||| | || || ||||| ||| || || ||||| |||||||||||||| |||||||| |||||||| |||||| ||||||| || || |
|
|
| T |
278166 |
tagaagcaggacgaagagcaataacacgatatgcacgtcgtggtggaaaaatatgggtacgtatatttcccgacaaaccggttacactaagacccacgga |
278067 |
T |
|
| Q |
218 |
aacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatata |
317 |
Q |
| |
|
||| |||||||| |||||||| || || ||||||||||||||||| || |||||||| || ||||||||||||||||| || || | |||| | || |
|
|
| T |
278066 |
aacacgtatgggctcgggaaaggggtcccccgaatattgggtagccgttgttaaaccaggtcgtatactttatgaaatggggggagtatctgaaactgta |
277967 |
T |
|
| Q |
318 |
gctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattc |
375 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||| ||||||| |||||| |||| |
|
|
| T |
277966 |
gctagagcagctatctccatagcggccagtaaaatgcccatacgaagtcaatttattc |
277909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 6920 - 7202
Alignment:
| Q |
19 |
gaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6920 |
gaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaat |
7019 |
T |
|
| Q |
119 |
agaagcagggcgacgggcgatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaa |
218 |
Q |
| |
|
||||||| |||||||||| || |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
7020 |
agaagcaaggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaatatgggtacgtatatttccagacaaacctgttacagtaatacctaccgaa |
7119 |
T |
|
| Q |
219 |
acgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg |
301 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7120 |
acgcgtatgggttcaggaaaagaatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg |
7202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 35195005 - 35195287
Alignment:
| Q |
19 |
gaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35195005 |
gaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaat |
35195104 |
T |
|
| Q |
119 |
agaagcagggcgacgggcgatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaa |
218 |
Q |
| |
|
||||||| |||||||||| || |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
35195105 |
agaagcaaggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaatatgggtacgtatatttccagacaaacctgttacagtaatacctaccgaa |
35195204 |
T |
|
| Q |
219 |
acgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg |
301 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35195205 |
acgcgtatgggttcaggaaaagaatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg |
35195287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 198 - 439
Target Start/End: Complemental strand, 36841142 - 36840901
Alignment:
| Q |
198 |
gttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841142 |
gttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgg |
36841043 |
T |
|
| Q |
298 |
gaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacg |
397 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841042 |
gaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacg |
36840943 |
T |
|
| Q |
398 |
aaataggtctttagtatgaaaaaaatggtaattgttggtttc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840942 |
aaataggtctttagtatgaaaaaaatggtaattgttggtttc |
36840901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 161 - 524
Alignment:
| Q |
18 |
agaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaa |
117 |
Q |
| |
|
|||||||||||||| || | | | |||||||||||| |||| ||||| | |||||||||||| |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
161 |
agaggaagaatgaaggggatatcttatcgaggtaatcggatttgtttcggtagatatgctcttcaagcacttgaacccgcttggattacatctagacaaa |
260 |
T |
|
| Q |
118 |
tagaagcagggcgacgggcgatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacagtaagacctaccga |
217 |
Q |
| |
|
||||||| ||||| || || ||| |||||||||| ||||| ||||| ||| |||||||||| ||||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
261 |
tagaagcggggcgccgcgcaatgacacgaaatgtacgccgtggtggaaaactatgggtacgtatatttccagacaaaccagttacggtaagacctacaga |
360 |
T |
|
| Q |
218 |
aacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatata |
317 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| | || || | ||||||||| |
|
|
| T |
361 |
aacacgtatgggttcggggaaaggatctcccgagtattgggtagctgtcgttaaaccgggcagaatactttatgaaatgagtggagtagccgaaaatata |
460 |
T |
|
| Q |
318 |
gctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcag |
381 |
Q |
| |
|
|| ||||||||||||||||||||||| || |||||||||||| ||| ||||||||| |||||| |
|
|
| T |
461 |
gccagaaaggctatttcaatagcggcgtcaaaaatgcctataaaaacgcaattcattatttcag |
524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 210 - 432
Target Start/End: Original strand, 18374946 - 18375165
Alignment:
| Q |
210 |
cctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccag |
309 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||| | || ||||| ||| ||| |||||||| | | ||||||||||||||||||| || ||||| |
|
|
| T |
18374946 |
cctaccgaaacgagtatgggttcgagaaaagaatcttctga-tattgaatagttgttgttaaacctgactaaatactttatgaaatgggggg--tcccaa |
18375042 |
T |
|
| Q |
310 |
aaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtcttt |
409 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
18375043 |
aaaatatagctagaaagaatatttcaatagcggcatccaaaatgcctatacgaactcaatttattctttgagaataactattagaacgaaatagatcttt |
18375142 |
T |
|
| Q |
410 |
agtatgaaaaaaatggtaattgt |
432 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
18375143 |
aatatgaaaaaaatggtaattgt |
18375165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 169 - 297
Target Start/End: Original strand, 10258309 - 10258437
Alignment:
| Q |
169 |
tatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgt |
268 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| |||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
10258309 |
tatgggtatgcataattccagacaaacttgttagagtaagacctactgaaacgtgtatgggtttgggaaacggatctcccgaatattgggtagctgtcat |
10258408 |
T |
|
| Q |
269 |
taaacccggcaaaatactttatgaaatgg |
297 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |
|
|
| T |
10258409 |
taaatccggtaaaatactttatgaaatgg |
10258437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 278 - 430
Target Start/End: Complemental strand, 46634463 - 46634306
Alignment:
| Q |
278 |
caaaatactttatgaaatgggaggcgtcccagaaaa-tatagctagaaaggctatttcaatagcggc-----atccaaaatgcctatacgaactcaattc |
371 |
Q |
| |
|
||||||| |||||||||||||||| | ||| |||| |||||||||||| |||||||||||||| || |||||| |||||||||| ||| ||| | |
|
|
| T |
46634463 |
caaaatattttatgaaatgggagggattccaaaaaaatatagctagaaaagctatttcaatagcagcgcgacatccaagatgcctatacaaacctaat-c |
46634365 |
T |
|
| Q |
372 |
attctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaatt |
430 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
46634364 |
attctttcagaagaataattagaaccaaatatgtctttagtataaaaaaaatggtaatt |
46634306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 5478497 - 5478421
Alignment:
| Q |
87 |
cttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcgatgtcacgaaatgttcgccgaggtgg |
163 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| |
|
|
| T |
5478497 |
cttgagcctgcttggatcacatctagacaaatagaaatgaggtgacggataatgtcacgaaatgttcgtcgaggtgg |
5478421 |
T |
|
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