View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16740_low_1 (Length: 652)
Name: NF16740_low_1
Description: NF16740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16740_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 17 - 652
Target Start/End: Complemental strand, 33388801 - 33388155
Alignment:
| Q |
17 |
atcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaagatttttgag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33388801 |
atcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattctacccttcccccagctatgcagcagaagatttttgag |
33388702 |
T |
|
| Q |
117 |
ccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388701 |
ccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtat |
33388602 |
T |
|
| Q |
217 |
atgttattgaccctggatttgccaagcagaaggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacacca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388601 |
atgttattgaccctggatttgccaagcagaaggtttataatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacacca |
33388502 |
T |
|
| Q |
317 |
gagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctgga |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33388501 |
gagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaa |
33388402 |
T |
|
| Q |
417 |
attttgagatctaatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaa |
516 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388401 |
attttgagatctaatcttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaa |
33388302 |
T |
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| Q |
517 |
ccttaat-----------aagtgttgaattacttaggtgcaattgatgatgaaggtatcttaacagagctgggtgagattatgagtgagattccattgga |
605 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
33388301 |
ccttaatgcgtgctttggaagtgttgaattacttaggtgcaattgatgatgaaggtaacttaacaaagctgggtgagattatgagtgagtttccattgga |
33388202 |
T |
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| Q |
606 |
acctcaggtgtcaaagggggttattgttagaacagagatcgactgtt |
652 |
Q |
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|||||| |||||||| | |||||||||| ||||| || |||||| |
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| T |
33388201 |
ccctcagatgtcaaagatgcttattgttagtccagagttcaactgtt |
33388155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 25 - 621
Target Start/End: Complemental strand, 38779834 - 38779227
Alignment:
| Q |
25 |
aagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaagatttttgagccagctcc |
124 |
Q |
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|||||||||| | ||||| |||||||||||||||||| | || | ||||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38779834 |
aagttgcaaacatgggggaccaggtgggccctgtgaaagccgtgccattatattctactcttcccccagctatgcaacagaagatttttgagccagctcc |
38779735 |
T |
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| Q |
125 |
gcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtatatgttatt |
224 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
38779734 |
acctccagttaaggagggaggcccccctggaaggaagattgtggtatcaacaaacatagcagaaacttccttgacaattgatggtatagtctatgttatt |
38779635 |
T |
|
| Q |
225 |
gaccctggatttgccaagcagaaggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacaccagagatcag |
324 |
Q |
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|| ||||||||||| ||||||||||| ||| | || ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |
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| T |
38779634 |
gatcctggatttgctaagcagaaggtctataaccctcgagttcgtgttgagtctttgttggtgtctccaatatcaaaagctagtgcacaccagaggtctg |
38779535 |
T |
|
| Q |
325 |
gtcgtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctggaattttgag |
424 |
Q |
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| ||||| ||||||||||| ||||||||||||| |||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
38779534 |
gacgtgctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgag |
38779435 |
T |
|
| Q |
425 |
atctaatcttgcaaacactgttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaat- |
523 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
38779434 |
atctaatcttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatg |
38779335 |
T |
|
| Q |
524 |
----------aagtgttgaattacttaggtgcaattgatgatgaaggtatcttaacagagctgggtgagattatgagtgagattccattggaacctcagg |
613 |
Q |
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|||||||||||||||| |||||| | ||||||||||||| ||||||| |||| |||||||||||||||||| |||||||||| |||||| |
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| T |
38779334 |
cgtgctttggaagtgttgaattacttgggtgcactggatgatgaaggtaacttaacaaagcttggtgagattatgagtgagtttccattggaccctcaga |
38779235 |
T |
|
| Q |
614 |
tgtcaaag |
621 |
Q |
| |
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|||||||| |
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| T |
38779234 |
tgtcaaag |
38779227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 47 - 621
Target Start/End: Original strand, 20816333 - 20816918
Alignment:
| Q |
47 |
ggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaagatttttgagccagctccgcctccagttaaggagggaggc |
146 |
Q |
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|||||||||||||||||| || | ||||||| || |||||||| |||||||| || | |||||||||||||||||| |||||||||| ||||||||| |
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| T |
20816333 |
ggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctccagttagagagggaggc |
20816432 |
T |
|
| Q |
147 |
ctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtatatgttattgaccctggatttgccaagcaga |
246 |
Q |
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|| |||||||| |||||| |||||||||||||||||||||||||||| ||||| || |||||||||| |||||| ||||||||||||| || ||||||| |
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| T |
20816433 |
cttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcaatggtatagtctatgttgttgaccctggattggctaagcaga |
20816532 |
T |
|
| Q |
247 |
aggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacaccagagatcaggtcgtgccggaagaactcaacc |
346 |
Q |
| |
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|||||||| | || ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| |
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| T |
20816533 |
aggtttataaccctcgagctcgtgttgagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaacc |
20816632 |
T |
|
| Q |
347 |
ggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcctggaattttgagatctaatcttgcaaacactgtt |
446 |
Q |
| |
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|||||||||| |||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||| |
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| T |
20816633 |
agggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagtt |
20816732 |
T |
|
| Q |
447 |
cttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaat-----------aagtgttgaatt |
535 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || ||||||||||| |||||||||||| |
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| T |
20816733 |
cttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaatt |
20816832 |
T |
|
| Q |
536 |
acttaggtgcaattgatgatgaaggtatcttaacagagctgggtgagattatgagtgagattccattggaacctcaggtgtcaaag |
621 |
Q |
| |
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|||| |||||||| ||||||||||||| ||||||| || ||||| |||||||||||||| |||| ||||| |||||| |||||||| |
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| T |
20816833 |
acttgggtgcaatggatgatgaaggtaacttaacaaagttgggtaagattatgagtgagtttccgttggaccctcagatgtcaaag |
20816918 |
T |
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