View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16740_low_3 (Length: 346)
Name: NF16740_low_3
Description: NF16740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16740_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 5554308 - 5554204
Alignment:
| Q |
136 |
gatgaatgacaaatgacatgttcaagccaagatatgaaagagagggaagaatcctctaattgaacacctaaaggaaagtaaaatcacacctttttcacta |
235 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| || |
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| T |
5554308 |
gatgaatgacaaataacatgttcaagccaagatatgaaagagagggaagaatcctctaatcgaacacctaaaggagagtaaaaccacacctttttcatta |
5554209 |
T |
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| Q |
236 |
aggtt |
240 |
Q |
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||||| |
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| T |
5554208 |
aggtt |
5554204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 5554460 - 5554362
Alignment:
| Q |
23 |
ggttccaagaaatggaggaatcggaaggctttggattatcatatattatattatatgtgtgttcaacattaaattatagtcatcaactagagtccaagcc |
122 |
Q |
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| T |
5554460 |
ggttccaagaaatggaggaatcggaaggctttggattatcatatattatat-----gtgtgttcaacattaaattatagtcatcaactagagtccaagtc |
5554366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 5554205 - 5554156
Alignment:
| Q |
277 |
ttaccacaaaataacaaactcatgtgattttatattcattaattgataca |
326 |
Q |
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| T |
5554205 |
ttaccacaaaataacaaactcatgtgattttatattcattaattgataca |
5554156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 55445700 - 55445608
Alignment:
| Q |
138 |
tgaatgacaaatgacatgttcaagccaagatatgaaagagagggaagaatcctctaattgaacacctaaaggaaagtaaaatcacaccttttt |
230 |
Q |
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| T |
55445700 |
tgaatgagaactgacatgatcgagccaagatataaaagagaggggagaatcctctaatcgaacacccaaagaagagtgaaaccacaccttttt |
55445608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 285
Target Start/End: Complemental strand, 21112758 - 21112609
Alignment:
| Q |
136 |
gatgaatgacaaatgacatgttcaagccaagatatgaaagagagggaagaatcctctaattgaacacctaaaggaaagtaaaatcacacctttttcacta |
235 |
Q |
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||||||||| ||||||| | |||||| ||||||||||| ||||||||| || ||| |||| ||| || |||||| ||| || || ||||||||| |
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| T |
21112758 |
gatgaatgagaaatgacctattcaagtcaagatatgaatgagagggaataagcctttaatcgaatactcaaaggagagtgcaaccaaacctttttcttcc |
21112659 |
T |
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| Q |
236 |
aggttcaccctttaaagacatagtctaaatctttgtcagcattaccacaa |
285 |
Q |
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| T |
21112658 |
aaatgcaccctttaaagacatggtccaaatctttgtcagcactaccacaa |
21112609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 55445864 - 55445807
Alignment:
| Q |
69 |
tatattatatgtgtgttcaacattaaattatagtcatcaactagagtccaagccttac |
126 |
Q |
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||||||| | |||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
55445864 |
tatattacaagtgtgttcaacattaaattatagtcatctactgcagtccaagccttac |
55445807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 24200064 - 24200158
Alignment:
| Q |
136 |
gatgaatgacaaatgacatgttcaagccaagatatgaaagagagggaagaatcctctaattgaacacctaaaggaaagtaaaatcacaccttttt |
230 |
Q |
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|||||| || |||||||||||| |||| |||||||||||| ||||||| |||||| ||| |||| || |||| | ||| ||| |||||| |||| |
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| T |
24200064 |
gatgaacgagaaatgacatgtttaagctaagatatgaaaggaagggaaggatcctcaaatcgaacccccaaagaagagtgaaaccacaccatttt |
24200158 |
T |
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