View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_high_23 (Length: 420)
Name: NF16741_high_23
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 16911169 - 16911578
Alignment:
| Q |
1 |
atcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgacaagtcacacgaccattgatggaagaggagctgatgttaccattgcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16911169 |
atcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgacaagtcacaagaccattgatggaagaggagctgatgttaccattgcta |
16911268 |
T |
|
| Q |
101 |
gtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatcaaaatttttgacatcgtggttggaagtggtggacttattagagatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16911269 |
gtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatcaaaatttttgacatcgtggttggaagtggtggacttattagagatgg |
16911368 |
T |
|
| Q |
201 |
tcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttttggctctagcaatatttggattgaccatgtttccatgagaaactgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16911369 |
tcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttttggctctagcaatatttggattgaccatgtttccatgagaaactgt |
16911468 |
T |
|
| Q |
301 |
agggatggactagttgatgccattatgggatccactgctattaccatctccaatagccatttcacagatcacaacgaggtaattagtaattaattcaata |
400 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16911469 |
agagatggactagttgatgccattatgggatccactgctattaccatctccaatagccatttcacagatcacaacgaggtaattagtaattaattcgata |
16911568 |
T |
|
| Q |
401 |
gttacctatg |
410 |
Q |
| |
|
||||| |||| |
|
|
| T |
16911569 |
gttacttatg |
16911578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 16915574 - 16915983
Alignment:
| Q |
1 |
atcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgacaagtcacacgaccattgatggaagaggagctgatgttaccattgcta |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||| || || ||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16915574 |
atcatcttcgctcgtagcatgaagattaggctcaaccaggagctcataatggcaggtaacaagaccattgatggacgaggagctgatgttaccattgcta |
16915673 |
T |
|
| Q |
101 |
gtggtgctggtattactatccagttcatcgagaatgtgatcatccatggaatcaaaatttttgacatcgtggttggaagtggtggacttattagagatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
16915674 |
atggtgctggtattactatccagttcatcgagaatgtgatcatccatgggatcaaaatttatgacattatggttggaagtggtggacttgttagagatag |
16915773 |
T |
|
| Q |
201 |
tcaggaccattttggtcaaaggactatgagtgatggtgatggaatttcaatttttggctctagcaatatttggattgaccatgtttccatgagaaactgt |
300 |
Q |
| |
|
| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16915774 |
tgaggaccattatggtctaaggactattagtgatggtgatggaatttcaatttttggctcaagccatatttggattgaccatgtttccatgagaaactgc |
16915873 |
T |
|
| Q |
301 |
agggatggactagttgatgccattatgggatccactgctattaccatctccaatagccatttcacagatcacaacgaggtaattagtaattaattcaata |
400 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16915874 |
agagatggactcattgatgccattatgggatccactgctattaccatctccaatagccatttcacagatcacaacgaggtaattagtaattaattcgata |
16915973 |
T |
|
| Q |
401 |
gttacctatg |
410 |
Q |
| |
|
||||| |||| |
|
|
| T |
16915974 |
gttacttatg |
16915983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1872638 - 1872578
Alignment:
| Q |
1 |
atcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgacaagtcaca |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1872638 |
atcaccttcgctcgtagcatgaccattaggctcaaccaggagctcataatgacaagtcaca |
1872578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 25007205 - 25007053
Alignment:
| Q |
228 |
gagtgatggtgatggaatttcaatttttggctctagcaatatttggattgaccatgtttccatgagaaactgtagggatggactagttgatgccattatg |
327 |
Q |
| |
|
||||||||||||||| ||||| || ||||| |||| ||| |||||||||| ||||||||||||||||| |||| ||||| | ||||||| || ||| |
|
|
| T |
25007205 |
gagtgatggtgatggtatttccatctttggtgctagtaatgtttggattgatcatgtttccatgagaaattgtactgatggtttgattgatgctataatg |
25007106 |
T |
|
| Q |
328 |
ggatccactgctattaccatctccaatagccatttcacagatcacaacgaggt |
380 |
Q |
| |
|
|| |||||||||||||||||||| || || || ||||| || ||||| ||||| |
|
|
| T |
25007105 |
ggttccactgctattaccatctctaacagtcacttcactgaccacaatgaggt |
25007053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University