View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_high_24 (Length: 418)
Name: NF16741_high_24
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_24 |
 | |
|
| [»] scaffold1825 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 50 - 400
Target Start/End: Original strand, 37639595 - 37639944
Alignment:
| Q |
50 |
ctatgaatccatatttttcaacgtaactagaggcacaacttttgatggtgcattcaatactagcatcgtaaaaactttaatgactcaacaacaaatatct |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639595 |
ctatgaatccatatttttcaacgtaactagaggcacaacttttgatggtgtattcaatactagcatcgtaaaaactttaatgactcaacaacaaatatct |
37639694 |
T |
|
| Q |
150 |
aaaacggtcacattttgtcgatgtcctaaaaaccccacatttaccggcacaataaatctataaggaggcttccatttttcaggttgcaaatagcaatgat |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37639695 |
aaaacggtcacattttgtcgatgtcctaaaaactccacatttaccggcacaataaatctataaggaggcttccatttttcaggtt-caaatagcaatgat |
37639793 |
T |
|
| Q |
250 |
gaggacaatctaattaattgctaacttaattgcgagtaattataaatatacatacatgtcaataattcatcgacgacctcattctaatcatgaaagcaat |
349 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37639794 |
gaggacaatctaattaattgataacttaattgcgagtaatcataaatatacatacatgtcaataattcatcgacgacctcattctagtcatgaaagcaac |
37639893 |
T |
|
| Q |
350 |
aagaaataatgtcaacgaacaatctctctcaaactttaccactcacaccct |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37639894 |
aggaaataatgtcaacgaacaatctctctctaactttaccactcacaccct |
37639944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 35 - 289
Target Start/End: Original strand, 37634049 - 37634303
Alignment:
| Q |
35 |
tagatgataaccactctatgaatccatatttttcaacgtaactagaggcacaacttttgatggtgcattcaatactagcatcgtaaaaactttaatgact |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634049 |
tagatgataaccactctatgaatccatatttttcaatgtaactagaggcacaacttttgatggtgcattcaatactagcatcgtaaaaactttaatgact |
37634148 |
T |
|
| Q |
135 |
caacaacaaatatctaaaacggtcacattttgtcgatgtcctaaaaaccccacatttaccggcacaataaatctataaggaggcttccatttttcaggtt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634149 |
caacaacaaatatctaaaacggtcacattttgtcgatgtcctaaaaactccacgtttactggcacaataaatctataaggaggcttccatttttcaggtt |
37634248 |
T |
|
| Q |
235 |
gcaaatagcaatgatgaggacaatctaattaattgctaacttaattgcgagtaat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37634249 |
gcaaatagcaatgatgaggacaatctaattaattgataacttaattgcgagtaat |
37634303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1825 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold1825
Description:
Target: scaffold1825; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 195 - 289
Target Start/End: Original strand, 1 - 95
Alignment:
| Q |
195 |
ggcacaataaatctataaggaggcttccatttttcaggttgcaaatagcaatgatgaggacaatctaattaattgctaacttaattgcgagtaat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1 |
ggcacaataaatctataaggaggcttccatttttcaggttgcaaatagcaatgatgaggacaatctaattaattgataacttaattgcgagtaat |
95 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University