View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_high_3 (Length: 677)
Name: NF16741_high_3
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 42519196 - 42518916
Alignment:
| Q |
11 |
cagagacaaacaaaaaggtacgtgaagtgacacacacaggtgcactgaaatctagggggattgaaaaaaggacttaacctgtaactctgaggccatgatg |
110 |
Q |
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| T |
42519196 |
cagaaacaaacaaaaaggtacgtgaagtgacacacacaggtgcactgaaatctagggggattgaaaaaaggacttaacctgtaactctgaggccatgatg |
42519097 |
T |
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| Q |
111 |
gattataagaactttgtttcctctgtggtggattttcatttgagtaattggaagaatcagaatcatttccatcatcacctttgttaaaatccttatcatc |
210 |
Q |
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| T |
42519096 |
gattataagaactttgtttcctctgtggtggattttcatttgagtaattggaagaatcagaatcatttccatcatcacctttgttaaaatccttatcatc |
42518997 |
T |
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| Q |
211 |
ttcttcatcactttcaataataaaactgttctctgaagctactgagttattcatcttcactcttcaccaactattcacctt |
291 |
Q |
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| T |
42518996 |
ttcttcatcactttcaataataaaactgttctctgaagctactgagttattcatcttcactcttcaccaactattcacctt |
42518916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 369 - 507
Target Start/End: Complemental strand, 42518838 - 42518708
Alignment:
| Q |
369 |
ccggatctggattaattggtatcgaaaatgcaaactgcatggtaatatggtatgaacttggaatttgaaagcttacatataaaatattttagctgagaaa |
468 |
Q |
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| T |
42518838 |
ccggatctggattaattggtatcgaaaatgcaaactgcatggtt--------tgaacttggaatttgaaagcttacatataaaatattttagctgagaaa |
42518747 |
T |
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| Q |
469 |
ctctatgataaaatttcagctatgcatgcatagtttaac |
507 |
Q |
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| T |
42518746 |
ctctatgataaaatttcagctatgcatgcatagtttaac |
42518708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 580 - 662
Target Start/End: Complemental strand, 42518635 - 42518553
Alignment:
| Q |
580 |
ccatagcatgaacgacacttgtgctttttgtttacaaaacaaaacaaagtgaaaatctaggaaaagaggaagacagagaaaag |
662 |
Q |
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| T |
42518635 |
ccatagcatgaacgacacttgtgctttttgtttacaaaacaaaacaaagtgaaaatctaggaaaagaggaagacagagaaaag |
42518553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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