View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_high_31 (Length: 407)
Name: NF16741_high_31
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 9676783 - 9677178
Alignment:
| Q |
1 |
aaagagagagatagcgagataatgggaaattgaattgatgtgggaaggtagggatatccaaatataatcaccctaaatttgtttatctctgaaaattaga |
100 |
Q |
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| T |
9676783 |
aaagagagagatagcgagataatgagaaattgaattgatgtgggaaggtagggatatccaaatataatcaccctaaatttgtttatctctgaaaattaga |
9676882 |
T |
|
| Q |
101 |
atgttcggtagcatatttgtgctcatcgacatcacccctgaatcctctcnnnnnnncatcaccccatatttgtgtggtgtgcataatattctttaaattt |
200 |
Q |
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| T |
9676883 |
atgttcggtagcatatttgtgctcatcaacatcacccctgaatcctctcaaaaaaacatcaccccatatttgtgtggtgtgcataatattctttaaattt |
9676982 |
T |
|
| Q |
201 |
gggatatacactattcaatcttacttagaagggaaagattgttattagtattaaccctttgaagaaccatgttaaaaggagaaaatgattcatctttagg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9676983 |
gggatatacactattcaatcttacttagaagggaaagattgttattactattaaccctttgaagaaccatgttaaaaggagaaaatgattcatctttagg |
9677082 |
T |
|
| Q |
301 |
acactaggtctttagaagctttagtatcatatcatcaaccaactagccagaagttttaggatatggatattatcacaaactatttctgtatttcat |
396 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9677083 |
acactaggtctttagaagctttagcatcatatcatcaaccaactagccagaagttttaggatatggatactatcacaaactatttctgtatttcat |
9677178 |
T |
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