View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_high_32 (Length: 390)
Name: NF16741_high_32
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 18725273 - 18725652
Alignment:
| Q |
1 |
aagcatgagttaaccaccaatgagtcatccccccaacatcagcaaggaatgtgattaaggcctgtacaagttggtttagttcgagaggtacataggtacc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18725273 |
aagcatgagttaaccatcaatgagtcatccccccaacatcagcaaggaatgtgattaaggcttgtgcaagttggtttagttcgagaggtacataggtacc |
18725372 |
T |
|
| Q |
101 |
atcaaagagaaagaagaaaggtctcgtgacaacatgggagatgtttagtatggttcatgtataaatacataagaggggcgggcgagctgagctagcgtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
18725373 |
atcaaagagaaagaagaaaggtctcgtgacaacatgggagatgtttagtatggttcatgtataaacacattagaggggtgggcgagctgagctagcgtat |
18725472 |
T |
|
| Q |
201 |
tgtttgcgatttgcgttttctgtaatcttctgttactagttgctgctctaataggaggaccttgatctttcatcttctgaaaaagaagatgaagaggaag |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18725473 |
tgtttgcgatttgtgttttctgtaatcttctgttactagttgctgctctaataggaggaccttgatctttcatcttctgaaaaagaagatgaagaggaag |
18725572 |
T |
|
| Q |
301 |
ctaacctctggtggcacatgtagaaccagatgatgaatcatgttcagaagatgataatgtattttcttactatccctttg |
380 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18725573 |
ctaacctctggtggcagatgtagaaccagatgatgaatcatgttcagaagatgataatgtattttcttactatccctttg |
18725652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 38970204 - 38970255
Alignment:
| Q |
200 |
ttgtttgcgatttgcgttttctgtaatcttctgttactagttgctgctctaa |
251 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| || ||||| |
|
|
| T |
38970204 |
ttgtttgcgatttgcgttttctttgatcttctgttactagttgatgttctaa |
38970255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 32349617 - 32349565
Alignment:
| Q |
199 |
attgtttgcgatttgcgttttctgtaatcttctgttactagttgctgctctaa |
251 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
32349617 |
attgtttgcgatttgtgttatctttaatcttttgttactagttgctgttctaa |
32349565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 52579724 - 52579771
Alignment:
| Q |
204 |
ttgcgatttgcgttttctgtaatcttctgttactagttgctgctctaa |
251 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
52579724 |
ttgcgattttcattttctttaatcttctgttactagttgctgttctaa |
52579771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University