View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_high_40 (Length: 323)
Name: NF16741_high_40
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 35946275 - 35946579
Alignment:
| Q |
1 |
atccaagtatacatgtagcactgcttgttttatttatagtattattaggcagtgtataactttttcttgaaggaggcagtaatataatttattatcatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35946275 |
atccaagtatacatgtagcactgcttgttttatttatagtattattaggcagtgtataactttttcttgaaggaggcagtaatataatttattatcatcc |
35946374 |
T |
|
| Q |
101 |
caaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggtatcaattcgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35946375 |
caaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggtatcaattcgtttg |
35946474 |
T |
|
| Q |
201 |
aagacattcacatctaagtcaagtccaccattggcgcactgatccactattctcactgtttcctgagctccagttgcagtatttttcacctgcatcatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35946475 |
aagacattcacatctaagtcaagtccaccattggcgcactgatccactattctcactgtttcctgagctccagttgcagtatttttcacctgcatcatca |
35946574 |
T |
|
| Q |
301 |
ccact |
305 |
Q |
| |
|
||||| |
|
|
| T |
35946575 |
ccact |
35946579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 89 - 298
Target Start/End: Original strand, 35952508 - 35952717
Alignment:
| Q |
89 |
ttattatcatcccaaagagggattcattcgcgttaattaacaattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggta |
188 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| ||| |||||| |||||||||||||| | ||| |||||||||||| ||||||||| |||||||||||| |
|
|
| T |
35952508 |
ttattatcatcacaaagagtgattaattcgcattatttaacagttaacaaagacatagttaaccgtaaggtgaccctgctggtaaccttgtccattggta |
35952607 |
T |
|
| Q |
189 |
tcaattcgtttgaagacattcacatctaagtcaagtccaccattggcgcactgatccactattctcactgtttcctgagctccagttgcagtatttttca |
288 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||| | ||||||||||| || || ||||||||||| |||||| ||||||||||||||||||||||| ||| |
|
|
| T |
35952608 |
tcaatttgattgaagacattcacatccaagtctaacccaccattggcacattggtccactattcttactgttgcctgagctccagttgcagtatttgtca |
35952707 |
T |
|
| Q |
289 |
cctgcatcat |
298 |
Q |
| |
|
|||||||||| |
|
|
| T |
35952708 |
cctgcatcat |
35952717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 129 - 298
Target Start/End: Original strand, 35939408 - 35939577
Alignment:
| Q |
129 |
caattaacaaagacataatcaactataaggtgacccttctggtaaccctgtccattggtatcaattcgtttgaagacattcacatctaagtcaagtccac |
228 |
Q |
| |
|
|||||||||||| ||| | |||| |||||||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
35939408 |
caattaacaaagctatagttaactgtaaggtgaccattctgaacgccctgtccattggtatcaatttgattgaagacattcacatctaagtcaagtccac |
35939507 |
T |
|
| Q |
229 |
cattggcgcactgatccactattctcactgtttcctgagctccagttgcagtatttttcacctgcatcat |
298 |
Q |
| |
|
| |||| ||| || |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35939508 |
cgttggagcattggtccactattctcactgttacctgagctccagttgcagtatttgtcacctgcatcat |
35939577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35952448 - 35952499
Alignment:
| Q |
1 |
atccaagtatacatgtagcactgcttgttttatttatagtattattaggcagt |
53 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
35952448 |
atccaagt-tacgtgtagcaccgcttgttttatttatggtattattagacagt |
35952499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University