View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_high_47 (Length: 289)
Name: NF16741_high_47
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 43532580 - 43532839
Alignment:
| Q |
13 |
aatatctacccaacacaatggcgcaaaccatgctattctagcaaacacataaccccgtcggcatctcaaatacaaataccaataccaaccttgttacgag |
112 |
Q |
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| T |
43532580 |
aatatctacccaacacaatggcgcaaaccatgctattctagcaaacacataaccccgtcggcatctcaaatacaaataccaataccaaccttgttacgag |
43532679 |
T |
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| Q |
113 |
aattagaaaaagaagcgtctacagtacacttgagtctagctagagcgggttgttgccatcgaatcatgttcatgttacttggccctgtaacatatttggt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532680 |
aattagaaaaagaagcgtctacagtacacttgagtctagctagagcgggttgttgccatcgaatcatgttcatgttacttggccctgtaacatatttggt |
43532779 |
T |
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| Q |
213 |
gctcgtgtaccactaccagtagatcttcttaattcctagaccagtttctagtcttctagc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43532780 |
gctcgtgtaccactaccagtagatcttcttaattcctagaccagtttctagtcttctagc |
43532839 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 20815125 - 20815045
Alignment:
| Q |
24 |
aacacaatggcgcaaaccatgctattctagcaaacacataaccccgtcggcatctcaaatacaaataccaataccaacctt |
104 |
Q |
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|||||||||| ||||||||| ||||| |||||| ||||||||||| ||| |||||| |||||| |||| ||||||||||| |
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| T |
20815125 |
aacacaatggtgcaaaccatactattttagcaagcacataaccccatcgacatctcgaatacacatactgataccaacctt |
20815045 |
T |
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