View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_high_51 (Length: 272)
Name: NF16741_high_51
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_51 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 4771779 - 4771546
Alignment:
| Q |
14 |
catagggaagcagagaggaagagaagaaacagaattaatggtcatcttgctaaactccgtgcactagtgccctcctctccaaaggtataataatcttcct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4771779 |
catagggaagcagagaggaagagaagaaacagaattaatggtcatcttgctaaactccgtgcactagtgccctcctctccaaaggtataataatcttcct |
4771680 |
T |
|
| Q |
114 |
ttctttttgtattttttatatgcatccaatcatattcattgtgtcacttcgttatattaatttttaaaatatctctatagtgaaatgtgattttttgata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4771679 |
ttctttttgtattttttatatgcatccaatcatatt---------actttgttatattaatttttaaaatatctctatagtgaaatgtgattttttgata |
4771589 |
T |
|
| Q |
214 |
aacatgttttacaacgatgatgtttaccaattgaaccttttta |
256 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4771588 |
aacatgttttacaccgatggtgtttaccaattgaaccttttta |
4771546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University