View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_high_52 (Length: 269)
Name: NF16741_high_52
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 28047059 - 28046819
Alignment:
| Q |
12 |
atgaacttgatccactctctctttttggttcaaaagagtttctcagaaggggggaagccctcagccacgggccaaaaaggaggtctttctcttctatttc |
111 |
Q |
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| T |
28047059 |
atgaacttgatccactctctctttttggttcaaaagaatttctcagaaggggggaggccctcagccacgggccaaaaaggaggtctttcttttctatttc |
28046960 |
T |
|
| Q |
112 |
ttcgaagtcttccccatcatgtccttctgtatcatcacggtccctcagctgatgtcctattctcccacacataaagcaaaaagtgggtagcctttcatat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28046959 |
ttcgaagtcttccccatcatgtccttctgtatcatcacaaccactcaactgatgtcctattctcccacacataaagcaaaatgtgggtagcctttcatat |
28046860 |
T |
|
| Q |
212 |
ttgaagaagaccattaaatctttaccattgtacctgataat |
252 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28046859 |
ttgaagaagaccattaaatctttaccattgtacctaataat |
28046819 |
T |
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