View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_high_6 (Length: 610)
Name: NF16741_high_6
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Original strand, 32312570 - 32313154
Alignment:
| Q |
8 |
gtagcaaaggcagaaagtacaataagtggtgtcttgatatctgtagtttggtcttctaaccacctgaatgaacacaatactacattgttgcttgctttac |
107 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32312570 |
gtagccaaggcagaaagtacaataagcggtgtcttgatatctgtagtttggtcttctaaccacctgaatgaacacaatactacattgttgcttgctttac |
32312669 |
T |
|
| Q |
108 |
ggtccattgttattattttgtaactggctttactatgaaactcatgttaataattcacattgtttctatctgcaggtatcgcgccatcacaagtgcttac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32312670 |
ggtccattgttattattttgtaactggctttactatgaaactcatgttaataattcac--tgtttctatctgcaggtatcgcgccatcacaagtgcttac |
32312767 |
T |
|
| Q |
208 |
tatcgtggggcacttggtgcacttcttgtatatgatgttacacgccatgctacatttgagaacgtcgatacatggctgaaagaactgtgaaaccacacag |
307 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32312768 |
tatcgtggggcagttggtgcacttcttgtatatgatgttacacgccatgcaacatttgagaacgtcgatacatggctgaaagaactgcgaaaccacacag |
32312867 |
T |
|
| Q |
308 |
attccaacattgttgtgatgtgtaatattccaaaagaaagtgagatacaaattagaaaatgacgaaaaaatgtaatataatttttcatagcatgttagac |
407 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32312868 |
attccaacattgttgtgatgtgtaatattccgaaagaaagtgagatgcaaattagaaaatgacgaaaaaatgtaatataatttttcatagcatgttagac |
32312967 |
T |
|
| Q |
408 |
tctctatgtaatcttaaaagacaagtttcatgtttcaataggagctgctgggtaagcaagtttattgctatgctgcatagtctatactctgttagttgtt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32312968 |
tctctatgtaatcttaaaagacaagtttcatgtttcaataggagctgctgggtaagcaagtttattgctatgctgcatagtctatactttgttagttgtt |
32313067 |
T |
|
| Q |
508 |
tttgaaatgttttcatctgcaaattgattagagtgtgattagtaatggccctattccccattatgcttcacaaccttctcatgcttg |
594 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313068 |
tttgaaatgttttcatctgcaaattgattagagtgtgattagtaatggccctattccccattatgcttcacaaccttctcatgcttg |
32313154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 442
Target Start/End: Complemental strand, 32788627 - 32788168
Alignment:
| Q |
8 |
gtagcaaaggcagaaagtacaataagtggtgtcttgatatctgtagtttggtcttctaaccacctgaatgaacacaatactacattgttgcttgctttac |
107 |
Q |
| |
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||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32788627 |
gtagccaaggcagaaagtacaataagcggtgtcttgatatctatagtttggtcttctaaccacctgaatgaacacaatactacattgttgcttgctttac |
32788528 |
T |
|
| Q |
108 |
ggtccattgttattat---tttgtaa--------------------ctggctttactatgaaactcatgttaataattcacattgtttctatctgcaggt |
184 |
Q |
| |
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| ||||||||||| || ||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32788527 |
gctccattgttatgattgatttgtaacaagcagccaatttttgtaactgcctttactaagaaactcatgtgaataattcacattgtttctatctgcaggt |
32788428 |
T |
|
| Q |
185 |
atcgcgccatcacaagtgcttactatcgtggggcacttggtgcacttcttgtatatgatgttacacgccatgctacatttgagaacgtcgatacatggct |
284 |
Q |
| |
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|||| | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
32788427 |
atcgagtcatcacaagtgcttactatcatggggcagttggtgcacttcttgtatatgatgttacacgccatgcaacatttgagaacgtcgacggatggct |
32788328 |
T |
|
| Q |
285 |
gaaagaactgtgaaaccacacagattccaacattgttgtgatgtgtaatattccaaaagaaagtgagatacaaattagaaaatgacg--aaaaaatgtaa |
382 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
32788327 |
gaaagaactgcgaaaccacacagattccaacattgttgtgatgtgtaatattccgaaagagagtgagatacaaattagaaaatgacgaaaaaaaatgtaa |
32788228 |
T |
|
| Q |
383 |
tataatttttcatagcatgttagactctctatgtaatcttaaaagacaagtttcatgttt |
442 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
32788227 |
tttaatttttcatagcatgttagactctctatgtaatcttaaaagacaagtttcaagttt |
32788168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 123 - 327
Target Start/End: Original strand, 31792314 - 31792518
Alignment:
| Q |
123 |
ttttgtaactggctttactatgaaactcatgttaataattcacattgtttctatctgcaggtatcgcgccatcacaagtgcttactatcgtggggcactt |
222 |
Q |
| |
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|||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31792314 |
ttttgtaattgactttactatgaaactcatgtttataattcacattgtttctatctgcaggtatcgcgccatcacaagtgcttactatcgtggggcagtt |
31792413 |
T |
|
| Q |
223 |
ggtgcacttcttgtatatgatgttacacgccatgctacatttgagaacgtcgatacatggctgaaagaactgtgaaaccacacagattccaacattgttg |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||| || | |||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
31792414 |
ggtgcacttcttgtatatgatgttacacgccatgcaacatttgaaaacgttgacagatggttgaaagaactgcgaaaccacacagattccaacattgttg |
31792513 |
T |
|
| Q |
323 |
tgatg |
327 |
Q |
| |
|
||||| |
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| T |
31792514 |
tgatg |
31792518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 325 - 477
Target Start/End: Original strand, 31792849 - 31793001
Alignment:
| Q |
325 |
atgtgtaatattccaaaagaaagtgagatacaaattagaaaatgacgaaaaaatgtaatataatttttcatagcatgttagactctctatgtaatcttaa |
424 |
Q |
| |
|
|||||||||||||| |||| || |||||||||||||||| | |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
31792849 |
atgtgtaatattccgaaagtgagagagatacaaattagaagaagacgaaaaaatgtaatttaatttttcatagtatgttagactctctatgtaatcttaa |
31792948 |
T |
|
| Q |
425 |
aagacaagtttcatgtttcaataggagctgctgggtaagcaagtttattgcta |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31792949 |
aagacaagtttcatgtttcaataggagctgctggggaagcaagtttattgcta |
31793001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 31792208 - 31792272
Alignment:
| Q |
36 |
gtgtcttgatatctgtagtttggtcttctaaccacctgaatgaacacaatactacattgttgctt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |
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| T |
31792208 |
gtgtcttgatatctgtagttttgtcttctaaccacctgaatgaacacaatgctgcattgttgctt |
31792272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 4373075 - 4372986
Alignment:
| Q |
238 |
tatgatgttacacgccatgctacatttgagaacgtcgatacatggctgaaagaactgtgaaaccacacagattccaacattgttgtgatg |
327 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||| || | ||| |||| || ||| || ||||||||||| |||||||||| |||||| |
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|
| T |
4373075 |
tatgatgttacacgtcatgttacatttgaaaacgtggagaggtggttgaaggagctgagagaccacacagatgccaacattgtggtgatg |
4372986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 536
Target Start/End: Complemental strand, 32788123 - 32788087
Alignment:
| Q |
500 |
tagttgtttttgaaatgttttcatctgcaaattgatt |
536 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
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| T |
32788123 |
tagttgttttttaaatgttttcatctgcaaattgatt |
32788087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 499
Target Start/End: Complemental strand, 32788174 - 32788139
Alignment:
| Q |
464 |
caagtttattgctatgctgcatagtctatactctgt |
499 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
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|
| T |
32788174 |
caagtttattactatgctgcatagtctatactctgt |
32788139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 327
Target Start/End: Original strand, 34701471 - 34701602
Alignment:
| Q |
196 |
acaagtgcttactatcgtggggcacttggtgcacttcttgtatatgatgttacacgccatgctacatttgagaacgtcgatacatggctgaaagaactgt |
295 |
Q |
| |
|
|||||||||||||||||||| || |||| || | | || ||||||||||| ||||||| ||||||||| || || || | |||||| ||||| ||| |
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| T |
34701471 |
acaagtgcttactatcgtggagctgttggcgctttgttagtctatgatgttacccgccatgttacatttgaaaatgtggagagatggctaaaagagctga |
34701570 |
T |
|
| Q |
296 |
gaaaccacacagattccaacattgttgtgatg |
327 |
Q |
| |
|
|| | ||||||||| ||||||| || |||||| |
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|
| T |
34701571 |
gagatcacacagatgccaacatcgtcgtgatg |
34701602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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