View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_high_64 (Length: 241)
Name: NF16741_high_64
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_64 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 40392334 - 40392126
Alignment:
| Q |
23 |
gatgattcaagtcatatgctgaaaaagttatgtagaaaatcctgcttactagcaatacaccatcattgctcnnnnnnnn-gtatgaagtgatcgagatcg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
40392334 |
gatgattcaagtcatatgctgaaaaagttatgtagaaaatcctgcttactagcaatacacaatcattgctctttttttttgtatgaagtgatcgagatcg |
40392235 |
T |
|
| Q |
122 |
acattagacgctgccattgaacaaagacaacaatgtagatgcaaataaattaaaatatcttttgtgcttaataagcagaactagtaagcatcattatccc |
221 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40392234 |
acattagactctgccattgaacaaagacaacaatgtagatgcaaataaattaaaatatcttttgtgcttaataagcagaactagtaagcatcattatccc |
40392135 |
T |
|
| Q |
222 |
ttagttcat |
230 |
Q |
| |
|
||| ||||| |
|
|
| T |
40392134 |
ttaattcat |
40392126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 40380939 - 40380818
Alignment:
| Q |
35 |
catatgctgaaaaagttatgtagaaaatcctgcttactagcaatacaccatcattgctcnnnnnnnngtatgaagtgatcgagatcgacattagacgctg |
134 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| || |||||||| |||||||||||||||| ||| |
|
|
| T |
40380939 |
catatgctgaaaaagttatttagaaaatccttcttgctagcaatacaccatcattgttctttttttcgtatgaag----cgagatcgacattagaatctg |
40380844 |
T |
|
| Q |
135 |
cc-attgaacaaagacaacaatgtag |
159 |
Q |
| |
|
|| | ||||||||||||||||||||| |
|
|
| T |
40380843 |
ccaaatgaacaaagacaacaatgtag |
40380818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 41052100 - 41052133
Alignment:
| Q |
139 |
tgaacaaagacaacaatgtagatgcaaataaatt |
172 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
41052100 |
tgaacaaagacaacaatgtatatgcaaataaatt |
41052133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University