View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_high_9 (Length: 544)
Name: NF16741_high_9
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Original strand, 6496149 - 6496591
Alignment:
| Q |
7 |
aagaatatcgtgagcttgaaaaccgtggatttaacatggtcattggtatgtatcaacaatatgatatgaagtatgaaccatattgttttgaatcttttct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6496149 |
aagaatatcgtgagcttgaaaaccgtggatttaacatggtcattggtatgtatcaataatatgatatgaagtatgaaccat--tgttttgaatcttttct |
6496246 |
T |
|
| Q |
107 |
taataaggtttgctgctat-aaatcttagctataaaatttgcattttggaatggatagggtggcatggaaatgttgagcaacggactagaggaatagcaa |
205 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496247 |
taataaggtttgctgctattaaatcttagctataaaatttgcattttggaatggatagggtggcatggaaatgttgagcaacggactagaggaatagcaa |
6496346 |
T |
|
| Q |
206 |
tggctacaactacaacagctccagcagttgaacagggcatgagtcgttgaagtgagtgaagatatccatatgtattttgtgtgcttcattcagtgagtgt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6496347 |
tggctacaactacaacagctccagcagttgaacagggcatgagtcgttgaagtgagtgaagatatccatatgtattttgtgtgcttcattcagtgagtgt |
6496446 |
T |
|
| Q |
306 |
gttcatatataatctttgtgttcatcttatcttatcttatttagtacaatcgtgtctgaaatatgaggattcttgtgtcactggtaacaaaaataaaagt |
405 |
Q |
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| T |
6496447 |
gttcatatataatctttgtgttcatcttatcttatcttatttagtacaatagtgtctgaaatatgaggattcttgtgtcactggtaacaaaaataagagt |
6496546 |
T |
|
| Q |
406 |
tgttaatgtaatgtaatcaaatatcaaacaaatgtaatacactca |
450 |
Q |
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| T |
6496547 |
tgctaatgtaatgtaatcaaatatcaaacaaatgtaatccactca |
6496591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 160 - 268
Target Start/End: Original strand, 44211902 - 44212013
Alignment:
| Q |
160 |
atagggtggcatggaaatgttgagcaacggactagaggaatagcaatggctacaact---acaacagctccagcagttgaacagggcatgagtcgttgaa |
256 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||||||| |
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| T |
44211902 |
atagggtggcatggaaatgttgagcaacgtaccagaggaatagcaatggctacaactacaacaacagctccaacagttgaacatggcatgagccgttgaa |
44212001 |
T |
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| Q |
257 |
gtgagtgaagat |
268 |
Q |
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|||||||||||| |
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| T |
44212002 |
gtgagtgaagat |
44212013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 44211776 - 44211828
Alignment:
| Q |
7 |
aagaatatcgtgagcttgaaaaccgtggatttaacatggtcattggtatgtat |
59 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
44211776 |
aagaatatcgtgaacttgagaaccgtggatttaacatggtcattggtatgtat |
44211828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 44221894 - 44221946
Alignment:
| Q |
7 |
aagaatatcgtgagcttgaaaaccgtggatttaacatggtcattggtatgtat |
59 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
44221894 |
aagaatatcgtgagcttgaaaaccgtggatttgacatggaacttggtatgtat |
44221946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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