View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_11 (Length: 535)
Name: NF16741_low_11
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Complemental strand, 34732886 - 34732395
Alignment:
| Q |
19 |
cacttccctctgctctgctctgctcattccaaatggttggaacgnnnnnnnccgttcaaacaaaca-cactcccatttctttgtttcaacattctagtat |
117 |
Q |
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| T |
34732886 |
cacttccctctgctctgctctgctcattccaaatggttggaacgtttttttccgttcaaacaaacaacactcccatttctttgtttcaacattctagtat |
34732787 |
T |
|
| Q |
118 |
ttttctctttctctgaatctcatttttgctgataaaaatgaacaagaagcttaactgttaagaatctcactctattattactactgttatcaaatgatga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34732786 |
gtttctctttctctgaatctcatttttgctgataaaaatgaacaagaagcttaactgttaagaatctcactctattattactactgttatcaaatgatga |
34732687 |
T |
|
| Q |
218 |
ttacaaccagtagtgctaagtttggttgtgttagttttgcagaatttatttcaatttttggttatagattcatgttactgttttctcttttcaaaagact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34732686 |
ttacaaccagtagtgctaagtttggttgtgttagttttgcagaatttatttcaatttttggttatagattcatgttactgttttctcttttcaaaagact |
34732587 |
T |
|
| Q |
318 |
ttgataataattatttaagtgattttgtcattcaaatgtgtttgtgtcttttttgtctaatcattttctgagatagttaagttttcatgagtgttttgtc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34732586 |
ttgataataattatttaagtgattttgtcattcaaatgtgtttgcgtcttttttgactaatcattttctgagatagttaagttttcatgagtgttttgtc |
34732487 |
T |
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| Q |
418 |
tattcctctatgctgtaattgtgttttgattcaaatgtgtttgtaca-nnnnnnnggcttattattttctgagatagatagcttttcttgag |
508 |
Q |
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| T |
34732486 |
tattcctctatgctgtaattgtgttttgattcaaatgtgtttgtacattttttttggcttattattttctgagatagatagcttttcttgag |
34732395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 34723005 - 34722961
Alignment:
| Q |
346 |
cattcaaatgtgtttgtgtcttttttgtctaatcattttctgaga |
390 |
Q |
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||||||||||||||||| ||||||||| || ||||| |||||||| |
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| T |
34723005 |
cattcaaatgtgtttgtatcttttttgacttatcatgttctgaga |
34722961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 34665467 - 34665520
Alignment:
| Q |
334 |
aagtgattttgtcattcaaatgtgtttgtgtcttttttgtctaatcattttctg |
387 |
Q |
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|||| |||||||||||||||||||||||||||| ||||| || |||||| |||| |
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| T |
34665467 |
aagttattttgtcattcaaatgtgtttgtgtctcttttggcttatcattgtctg |
34665520 |
T |
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