View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_12 (Length: 523)
Name: NF16741_low_12
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 16733610 - 16733115
Alignment:
| Q |
18 |
cattcaatctactcaaattacctaattcaggtggaataaaaccagtgagttgannnnnnngcaagaaaagtgtatctagcttgttaagttgacctaactc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16733610 |
cattcaatctactcaaattacctaattcaggtggaataaaaccagtgagttgatttttttgcaagaaaagtgtatctagcttgttaagttgacctaactc |
16733511 |
T |
|
| Q |
118 |
aagtggaattgaacctttcaagaaacaacttgctaggtctaaatgaaccaaattaatcaacttaccaaactcttttggaactccaccatcaaattgattg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16733510 |
aagtggaattgaacctttcaagaaacaacttgctaggtctaaatgaaccaaattaatcaacttaccaaactcttttggaactccaccatcaaattgattg |
16733411 |
T |
|
| Q |
218 |
aaataacctaaataaagattttccaaactagtcaaatttccaagctcactaggtaaaaaaccactcaaatcatttccagcaagagacaaaaaattaagct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16733410 |
aaataacctaaataaagattttccaaactagtcaaatttccaagctcactaggtaaaaaaccactcaaatcatttccagcaagagacaaaaaattaagct |
16733311 |
T |
|
| Q |
318 |
gtttcatttctccataacttgtaggaatttttccagaaaagtaattccctccaaaattcagatgcttgagacttgaaacttgagtaacaccacgaggaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16733310 |
gtttcatttctccataacttgtaggaatttttccagaaaagtaattccctccaaaattcagatgcttgagacttgaaacttgagtaacaccacgaggaag |
16733211 |
T |
|
| Q |
418 |
cgaaccgttaaaaccattgttgtaaatatccaacacttcaagctctttcaatttgttgaattcccaactcaagtttccactaaacatattcttcga |
513 |
Q |
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| T |
16733210 |
cgaaccgttaaaaccgttgttgtaaatatccaacacttcaagctctttcaatttgttgaattcccaactcaagtttccactaaacatattgttcga |
16733115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 39227602 - 39227900
Alignment:
| Q |
20 |
ttcaatctactcaaattacctaattcaggtggaataaaaccagtgagttgannnnnnngcaagaaaagtgtatctagcttgttaagttgacctaactcaa |
119 |
Q |
| |
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||||| ||||| | ||| ||||||| ||||||||| ||||| | |||||| ||||||||||||| ||||| |||| ||||| |||| |||| |
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| T |
39227602 |
ttcaaactactaagattccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcat |
39227701 |
T |
|
| Q |
120 |
gtggaattgaacctttcaagaaacaacttgctaggtctaaatgaaccaaattaatcaacttaccaaactcttttggaactccaccatcaaattgattgaa |
219 |
Q |
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||||||||||||||||||| ||| |||| || || | |||||| ||||||| | |||||||| | ||||| | |||||||||| | |||| | |
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| T |
39227702 |
gtggaattgaacctttcaaaccacagtttgcaagatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgta |
39227801 |
T |
|
| Q |
220 |
ataacctaaataaagattttccaaactagtcaaatttccaagctcactaggtaaaaaaccactcaaatcatttccagcaagagacaaaaaattaagctg |
318 |
Q |
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||||||||| |||| | | | | |||| | ||||||||||||| ||||| ||||| ||||||||||| || |||||||||||| | |||||||| |
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| T |
39227802 |
ataacctaacaaaaggtgtgtaagattagtaagatttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagagacaaatagttaagctg |
39227900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 25546801 - 25546919
Alignment:
| Q |
20 |
ttcaatctactcaaattacctaattcaggtggaataaaaccagtgagttgannnnnnngcaagaaaagtgtatctagcttgttaagttgacctaactcaa |
119 |
Q |
| |
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||||| ||||| | ||| ||||||| ||||||||| ||||| | |||||| ||||||||||||| ||||| |||| ||||| | || |||| |
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| T |
25546801 |
ttcaaactactaagattccctaattgaggtggaattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcgtagctcat |
25546900 |
T |
|
| Q |
120 |
gtggaattgaacctttcaa |
138 |
Q |
| |
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||||||||||||||||||| |
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| T |
25546901 |
gtggaattgaacctttcaa |
25546919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 25547034 - 25547099
Alignment:
| Q |
253 |
atttccaagctcactaggtaaaaaaccactcaaatcatttccagcaagagacaaaaaattaagctg |
318 |
Q |
| |
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||||||||||||| ||||| ||||| ||||||||||| || |||||||||||| | |||||||| |
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| T |
25547034 |
atttccaagctcaaaaggtatgaaacctctcaaatcattacctgcaagagacaaatagttaagctg |
25547099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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