View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_low_14 (Length: 503)
Name: NF16741_low_14
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 281 - 492
Target Start/End: Original strand, 44567494 - 44567705
Alignment:
| Q |
281 |
atatcacaaatataccatgtctaactttacttttactatataacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcc |
380 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44567494 |
atatcacaaatataccatgtctaattttacttttactatataacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcc |
44567593 |
T |
|
| Q |
381 |
tctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcatt |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44567594 |
tctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcatt |
44567693 |
T |
|
| Q |
481 |
gttcttctctct |
492 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44567694 |
gttcttctctct |
44567705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 44567228 - 44567429
Alignment:
| Q |
17 |
agtatctattatcattctgttgttgcatttgcatctacctttgttactccatattgtgacgaacagccgttcaacagaattagaaacattagctaccttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44567228 |
agtatctattatcattctgttgttgcatttgcatctacctttgttactccatattgtgacgaacagccgttcaacagaattagaaacattagctaccttg |
44567327 |
T |
|
| Q |
117 |
atacacccttgagcttatttg--tttgtgttctttatttagtttatttgttaatcttgaaggacgccttttccttcctcctagtagtacttcattgcttc |
214 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44567328 |
atacacccttgagcttatttgtttttttgttctttatttagtttatttgttaatcttgaaggacgccttttccttcctcctagtagtacttcattgcttc |
44567427 |
T |
|
| Q |
215 |
at |
216 |
Q |
| |
|
|| |
|
|
| T |
44567428 |
at |
44567429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 295 - 492
Target Start/End: Complemental strand, 36029299 - 36029101
Alignment:
| Q |
295 |
ccatgtctaactttacttttactatat-aacagggaaggtcggagggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtg |
393 |
Q |
| |
|
|||||| ||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
36029299 |
ccatgtttaattttgcttttactatattaacagggaaggttggagggttcattgcttcaattcctggagtcatggttgctggtctcctctgctttatgtg |
36029200 |
T |
|
| Q |
394 |
ggcgatgcttacagcattaggcttgtccaatctacgctatactgagaccggaagctctcgaaatatcattatagttggactgtcattgttcttctctct |
492 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||| |||| | ||||||||||| |||||||| ||| ||||| | ||||||||||||||||| |
|
|
| T |
36029199 |
ggcaatgcttacagcattgggcttgtccaatctacgctatagtgaggctggaagctctcgcaatatcataataattggattatcattgttcttctctct |
36029101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 335 - 492
Target Start/End: Original strand, 20126433 - 20126590
Alignment:
| Q |
335 |
ggagggttcattgcttcaattcctgaagccatggttgctggtctcctctgcattatgtgggcgatgcttacagcattaggcttgtccaatctacgctata |
434 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||| | |||||||| ||||||||||| | |
|
|
| T |
20126433 |
ggagggttcattgcttcaattcctgaagttatggttgctggtctcctctgcttcatgtgggcaatgctcacagcttggggcttgtcaaatctacgctaca |
20126532 |
T |
|
| Q |
435 |
ctgagaccggaagctctcgaaatatcattatagttggactgtcattgttcttctctct |
492 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||| | |||||||| |||||||| |
|
|
| T |
20126533 |
gtgaggccggaagctctcgcaatatcatcatagttgggttatcattgtttttctctct |
20126590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University