View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_2 (Length: 836)
Name: NF16741_low_2
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_2 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 763; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 16 - 817
Target Start/End: Original strand, 7425330 - 7426132
Alignment:
| Q |
16 |
tgtcccatttatttatgtattgtagcttctggtgttgacaacattgattggcattgcccaaccaaaatgatttcgcttgattcaggtggtttttcttttg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7425330 |
tgtcccatttatttatgtattgtagcttcttgtgttgacaacattgattggcattgcccaaccaaaatgattttgcttgattcaggtggtttttcttttg |
7425429 |
T |
|
| Q |
116 |
tgttttgtattgcttgaacctgatgttgttggttcaggttctttcttggttatgccaactaggtgattggaggctcttgtattaaaattgtggcggacct |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7425430 |
tgttttgtattgcttgaacctgatgttgttggttcaggttctttcttggttatgccaactaggtgattggaggctcttgtattaaaattgtggcggacct |
7425529 |
T |
|
| Q |
216 |
ttttaa-acctagctctttaagtcctagggcatgtctctgtaacatcacagattatttacgctgtgtctgaaatatccgaagtcgtggcagattgacaaa |
314 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7425530 |
ttttaacacctagctctttaagtcctagggcatttctctgtaacatcacagattatttatgctgtgtctgaaatatccgaagtcgtggcagattgacaaa |
7425629 |
T |
|
| Q |
315 |
ttgttgattcatagtctgaggtgggggtctgtctgtggtgttttcttgttgttgctgactgtggtgtttctgtcggtctgctgaagaggggatgttctct |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7425630 |
ttgttgattcatagtctgaggtgggggtctgtctgtggtgttttcttgttgttgctgactgtggtgtttctgtcggtctgctgaagagggaatgttctct |
7425729 |
T |
|
| Q |
415 |
taatgtctcgagcttttgtttggaagcagagggagtcttgtggtgctgtgagtataggagctaaggtggttattattaaattacttcaatttggtagcaa |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425730 |
taatgtctcgagcttttgtttggaagcagagggagtcttgtggtgctgtgagtataggagctaaggtggttattattaaattacttcaatttggtagcaa |
7425829 |
T |
|
| Q |
515 |
gaggatatggctttagcagggttgtaatttttggcatttgagagtgccttttctgtaacaggtgcaggagtctgttgtagtgcagcagggacatctcatt |
614 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7425830 |
gaggatatggctttagcagggttataatttttggcatttgagagtgccttttctgtaacaggtgcaggcgtctgttgtagtgcagcagggacatctcatt |
7425929 |
T |
|
| Q |
615 |
ttgaatgcagatatagcaaggcgctgacagcaatattggtggtattgcaacagtataattcattaattgagaaaatattttttctttctcagggcatatt |
714 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425930 |
ttgaatgcagatatagcaaggcgctgacagcaatattggtggtattgcaacagtataattcattaattgagaaaatattttttctttctcagggcatatt |
7426029 |
T |
|
| Q |
715 |
aagatgttattctattctcttaaatggcagcagcatttgcaagttgttttcaaaattatgcgttaaattttcaacaattgcaatcttggcaaaccatggg |
814 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7426030 |
aagatgttattctattctcttaaatggcagcagcatttgcaagttgttttcaaaattatgcgttaaatttttaacaattgcaatcttggcaaaccatggg |
7426129 |
T |
|
| Q |
815 |
gaa |
817 |
Q |
| |
|
||| |
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|
| T |
7426130 |
gaa |
7426132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 11356927 - 11356823
Alignment:
| Q |
70 |
tgcccaaccaaaatgatttcgcttgattc-aggtggtttttcttttgtgttttgtattgcttgaacctgatgttgttggttcaggttctttcttggttat |
168 |
Q |
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||||| ||||||||||||| |||| ||| ||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||| ||||| |||||||| |
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| T |
11356927 |
tgccccaccaaaatgattttgctttattttaggtggtatttctttggtgttttgtattgcttgaacctagtgttgttagttcagggtcttt-ttggttat |
11356829 |
T |
|
| Q |
169 |
gccaac |
174 |
Q |
| |
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| |||| |
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| T |
11356828 |
gtcaac |
11356823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 277 - 815
Target Start/End: Complemental strand, 18139 - 17587
Alignment:
| Q |
277 |
tgtgtctgaaatatccgaagtcgtggcagattgacaaattgttgattcatagtctgaggtgggggtctgtctgtggtgttttcttgttgttgctgactgt |
376 |
Q |
| |
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||||||||||||||||||||| | ||||| ||| || || |||||||||||||||||| |||||| ||||| ||||| ||||||| || ||||| |||| |
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| T |
18139 |
tgtgtctgaaatatccgaagttgcggcagtttggcagttttttgattcatagtctgaggagggggtgtgtctatggtgctttcttgctgctgctggctgt |
18040 |
T |
|
| Q |
377 |
ggtgtttctgtcggtctgctgaagaggggatgttctcttaatgtctcgagcttttgtttggaagcagagggagtcttgtggtgctgtgagtat--aggag |
474 |
Q |
| |
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|||||||| ||||| | ||| |||||||| ||||| || |||| | ||||||| |||||||||||||||||||| || |||||| || | || || |
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| T |
18039 |
ggtgtttcggtcggccgtctgtagaggggacattctcatagggtctggtgcttttggttggaagcagagggagtcttatgatgctgtttgttttaagaag |
17940 |
T |
|
| Q |
475 |
ct-aaggtggttattattaaattacttcaatttggtagcaa------gaggatatggctttagcagggttgtaatttttggcatttgagagtgccttttc |
567 |
Q |
| |
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|| || |||||||||||| ||| | ||||| ||| ||||| |||| | |||||||||||| | |||||||||||||||| | | ||||| |
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| T |
17939 |
ctaaatgtggttattattcaatcagttcaagttgacagcaagaagaggaggctttggctttagcagttctaatatttttggcatttgagggcgttttttc |
17840 |
T |
|
| Q |
568 |
tgtaacaggtgcaggagtctgttgtagtgcagcaggga--------catctcattttgaatgcagatatagcaaggcgctgacagcaatattggtggtat |
659 |
Q |
| |
|
|||||||||| |||| | | | ||||||| || ||| ||||||| ||||| |||| ||||||||||| |||| |||||| ||||||||||| |
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| T |
17839 |
tgtaacaggtacaggcatattatttagtgcaacatggattttctttcatctcagtttgattgcatatatagcaaggtgctggcagcaacattggtggtat |
17740 |
T |
|
| Q |
660 |
tgcaacagtataattcattaattgagaaaatattttttctttctcagggcatattaagatgttattctattctcttaaatggcagcagcatttgcaagtt |
759 |
Q |
| |
|
||||||| ||||| ||||||||||||| | ||||||| |||||||| || || |||| ||||||||||||||||||||||||| | | ||| |
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| T |
17739 |
cctaacagtagaattccttaattgagaaaaga---tttctttgtcagggcaggttgagttgttcagctattctcttaaatggcagcagcatctttatgtt |
17643 |
T |
|
| Q |
760 |
gttttcaaaattatgcgttaaattttcaacaattgcaatcttggcaaaccatgggg |
815 |
Q |
| |
|
||||||| |||||| ||||||||||| || |||||||||| || |||| |||||| |
|
|
| T |
17642 |
gttttcatcattatgtgttaaattttcgactattgcaatctcgggaaactatgggg |
17587 |
T |
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