View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_21 (Length: 440)
Name: NF16741_low_21
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 4300984 - 4300774
Alignment:
| Q |
13 |
agcaaaggtttgtatttgagttgtaatggtaaatgataagaacatagcaagtggatctaatatgcaaataccatgcaaatggttaattacttacgtcaca |
112 |
Q |
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| T |
4300984 |
agcaaaggtttgtatttgagttgtaatggtaaatgataagaacatagcaagtggatctaatatgcaaataccatgcaaatggttaattacttacggcaca |
4300885 |
T |
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| Q |
113 |
agttagtttggtggtatcttgcttgcactaacacgaattggataacgagacttaaactcctaaataacacaaatcgtacgagtttctatcatattcaata |
212 |
Q |
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| T |
4300884 |
agttagtttggtggtatcttgcttgcactaacacgaattggataacgagacttaaactcctaaataacacaaatcgtacgagtttctatcatattcaata |
4300785 |
T |
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| Q |
213 |
attcatagctg |
223 |
Q |
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| T |
4300784 |
attgatagctg |
4300774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 251 - 342
Target Start/End: Complemental strand, 4300786 - 4300695
Alignment:
| Q |
251 |
taattgatagctgttatattccaaaataacacaaatagtatgacttaaactccctgataaataaaatgagatgtttttcgtcatcacaaaac |
342 |
Q |
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| T |
4300786 |
taattgatagctgttatattccaaaataacacaaatagtatgacttaaactccctgataaataaaatgagatgtttttcgtcatcacaaaac |
4300695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 4300663 - 4300609
Alignment:
| Q |
367 |
tgatcactttatgttgatattaatatcaaaattatgacttttttatgttcagcat |
421 |
Q |
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| T |
4300663 |
tgatcaatttatgtttatattaatatcaaaattatgacttttttatgttcagcat |
4300609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 7467160 - 7467116
Alignment:
| Q |
29 |
tgagttgtaatggtaaatgataagaacatagcaagtggatctaat |
73 |
Q |
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| T |
7467160 |
tgagttctaatggtaaatgataagaccatagcaagtggatctaat |
7467116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 33998685 - 33998738
Alignment:
| Q |
364 |
taatgatcactttatgttgatattaatatcaaaattatgacttttttatgttca |
417 |
Q |
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| T |
33998685 |
taatggtcactttatgttcatatgaatgtcaagattataacttttttatgttca |
33998738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 41909046 - 41908993
Alignment:
| Q |
364 |
taatgatcactttatgttgatattaatatcaaaattatgacttttttatgttca |
417 |
Q |
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| T |
41909046 |
taatgatcaatttatgttcatgttaatatcaagattatgacaattttatgttca |
41908993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 7532423 - 7532382
Alignment:
| Q |
363 |
ctaatgatcactttatgttgatattaatatcaaaattatgac |
404 |
Q |
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| T |
7532423 |
ctaatgatcaatttatgttcatattaatatcaagattatgac |
7532382 |
T |
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