View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16741_low_22 (Length: 436)

Name: NF16741_low_22
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16741_low_22
NF16741_low_22
[»] chr4 (3 HSPs)
chr4 (24-287)||(26187483-26187746)
chr4 (31-66)||(13520868-13520903)
chr4 (33-65)||(39320736-39320768)
[»] chr7 (1 HSPs)
chr7 (31-66)||(9649843-9649878)
[»] chr1 (1 HSPs)
chr1 (35-65)||(8273059-8273089)
[»] chr6 (2 HSPs)
chr6 (32-65)||(28963740-28963773)
chr6 (33-65)||(2886402-2886434)
[»] chr3 (1 HSPs)
chr3 (33-65)||(28126365-28126397)


Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 26187746 - 26187483
Alignment:
Q  24 tgtgtaaagtcttttaactcaatttccacacatgtttcaacatccactcttcctaaatctcattcatgactatcatccaaccatgttgaacatgcaaatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26187746 tgtgtaaagtcttttaactcaatttccacacatgtttcaacatccactcttcctaaatctcattcatgactatcatccaaccatgttgaacatgcaaatt 26187647  T
Q  124 tactgaggtcannnnnnncccctcatctatcaaatttcaaaataggtggactgctcatgaagattgtaaaagcgtgattcatgatcattggacttaggag 223  Q
    |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26187646 tactgaggtcatttttttcccctcatctatcaaatttcaaaataggtggactgctcatgaagattgtaaaagggtgattcatgatcattggacttaggag 26187547  T
Q  224 gttattggttgtcctatgtacatcattcagcagaaagtcaaaattcttaaacctgttttaaaaa 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26187546 gttattggttgtcctatgtacatcattcagcagaaagtcaaaattcttaaacctgttttaaaaa 26187483  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 13520903 - 13520868
Alignment:
Q  31 agtcttttaactcaatttccacacatgtttcaacat 66  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13520903 agtcttttaactcaatttccacacatgttccaacat 13520868  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 39320736 - 39320768
Alignment:
Q  33 tcttttaactcaatttccacacatgtttcaaca 65  Q
    ||||||||||||||||||||||||||| |||||    
T  39320736 tcttttaactcaatttccacacatgttccaaca 39320768  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 9649878 - 9649843
Alignment:
Q  31 agtcttttaactcaatttccacacatgtttcaacat 66  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9649878 agtcttttaactcaatttccacacatgttccaacat 9649843  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 8273089 - 8273059
Alignment:
Q  35 ttttaactcaatttccacacatgtttcaaca 65  Q
    |||||||||||||||||||||||||||||||    
T  8273089 ttttaactcaatttccacacatgtttcaaca 8273059  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 28963773 - 28963740
Alignment:
Q  32 gtcttttaactcaatttccacacatgtttcaaca 65  Q
    |||||||||||||||||||||||||||| |||||    
T  28963773 gtcttttaactcaatttccacacatgttccaaca 28963740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 2886434 - 2886402
Alignment:
Q  33 tcttttaactcaatttccacacatgtttcaaca 65  Q
    |||||||||||||||| ||||||||||||||||    
T  2886434 tcttttaactcaattttcacacatgtttcaaca 2886402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 28126365 - 28126397
Alignment:
Q  33 tcttttaactcaatttccacacatgtttcaaca 65  Q
    |||||||||||||||| ||||||||||||||||    
T  28126365 tcttttaactcaattttcacacatgtttcaaca 28126397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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