View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_27 (Length: 414)
Name: NF16741_low_27
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 36 - 397
Target Start/End: Complemental strand, 227611 - 227250
Alignment:
| Q |
36 |
gtaatcattttgatgattaatcttagttgtgaaaagtcttgtatattcactttgtttgggatgtcaacttctgatatgcaggatgagtcagaagatttca |
135 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
227611 |
gtaatcattttgatgattaatcttagttgtgaaaagtcttgtatattcactttgtttgggatgtcaacttctgatatgcaggatgagtcagaagatttca |
227512 |
T |
|
| Q |
136 |
tcaaaaggcagcagttgcgggaattggcattgctgaattcaaatttaagagaagagagtcctggaccaagcggtagtgtatctccatttaattctagtgg |
235 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
227511 |
tcaaaaggcagcagttgcgggaattggcattgttgaattcaaatttgagagaagagagtcctggaccaagcggtagtgtatctccatttaattctagtgg |
227412 |
T |
|
| Q |
236 |
aatgaagcgagcaaaaactggtagatgaaaggtgtccttgttatcttagattggtatttgtccagcaacccattgctgggaatatcttgcagtacatctg |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
227411 |
aatgaagcgagcaaaaactggtagatgaaaggtgtccttgttatcttagattggtatttgtccagcaacccattgctgggaatatcttgcagtacatctg |
227312 |
T |
|
| Q |
336 |
catcaatgcagctatgaaagaataggctgacaactattgctggctagcattctggtgatttt |
397 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
227311 |
catcaatgcagctatgaaagaataggctgacaattattgctggctagcattctggtgatttt |
227250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 36 - 397
Target Start/End: Complemental strand, 704024 - 703663
Alignment:
| Q |
36 |
gtaatcattttgatgattaatcttagttgtgaaaagtcttgtatattcactttgtttgggatgtcaacttctgatatgcaggatgagtcagaagatttca |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
704024 |
gtaatcattttgatgattaatcttagttgtgaaaagtcttgtatattcactttgtttgggatgtcaacttctgatatgcaggatgagtcagaagatttca |
703925 |
T |
|
| Q |
136 |
tcaaaaggcagcagttgcgggaattggcattgctgaattcaaatttaagagaagagagtcctggaccaagcggtagtgtatctccatttaattctagtgg |
235 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
703924 |
tcaaaaggcagcagttgcgggaattggcattgttgaattcaaatttgagagaagagagtcctggaccaagcggtagtgtatctccatttaattctagtgg |
703825 |
T |
|
| Q |
236 |
aatgaagcgagcaaaaactggtagatgaaaggtgtccttgttatcttagattggtatttgtccagcaacccattgctgggaatatcttgcagtacatctg |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
703824 |
aatgaagcgagcaaaaactggtagatgaaaggtgtccttgttatcttagattggtatttgtccagcaacccattgctgggaatatcttgcagtacatctg |
703725 |
T |
|
| Q |
336 |
catcaatgcagctatgaaagaataggctgacaactattgctggctagcattctggtgatttt |
397 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
703724 |
catcaatgcagctatgaaagaataggctgacaattattgctggctagcattctggtgatttt |
703663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 36 - 397
Target Start/End: Complemental strand, 741234 - 740873
Alignment:
| Q |
36 |
gtaatcattttgatgattaatcttagttgtgaaaagtcttgtatattcactttgtttgggatgtcaacttctgatatgcaggatgagtcagaagatttca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
741234 |
gtaatcattttgatgattaatcttagttgtgaaaagtcttgtatattcactttgtttgggatgtcaacttctgatatgcaggatgagtcagaagatttca |
741135 |
T |
|
| Q |
136 |
tcaaaaggcagcagttgcgggaattggcattgctgaattcaaatttaagagaagagagtcctggaccaagcggtagtgtatctccatttaattctagtgg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
741134 |
tcaaaaggcagcagttgcgggaattggcattgttgaattcaaatttgagagaagagagtcctggaccaagcggtagtgtatctccatttaattctagtgg |
741035 |
T |
|
| Q |
236 |
aatgaagcgagcaaaaactggtagatgaaaggtgtccttgttatcttagattggtatttgtccagcaacccattgctgggaatatcttgcagtacatctg |
335 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
741034 |
aatgaagcgagcaaaaactggtagatgaaaggtgtccttgttatcttagattggtatttgtccagcaacccattgctgggaatatcttgcagtacatctg |
740935 |
T |
|
| Q |
336 |
catcaatgcagctatgaaagaataggctgacaactattgctggctagcattctggtgatttt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
740934 |
catcaatgcagctatgaaagaataggctgacaattattgctggctagcattctggtgatttt |
740873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 36 - 397
Target Start/End: Complemental strand, 865129 - 864768
Alignment:
| Q |
36 |
gtaatcattttgatgattaatcttagttgtgaaaagtcttgtatattcactttgtttgggatgtcaacttctgatatgcaggatgagtcagaagatttca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
865129 |
gtaatcattttgatgattaatcttagttgtgaaaagtcttgtatattcactttgtttgggatgtcaacttctgatatgcaggatgagtcagaagatttca |
865030 |
T |
|
| Q |
136 |
tcaaaaggcagcagttgcgggaattggcattgctgaattcaaatttaagagaagagagtcctggaccaagcggtagtgtatctccatttaattctagtgg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
865029 |
tcaaaaggcagcagttgcgggaattggcattgttgaattcaaatttgagagaagagagtcctggaccaagcggtagtgtatctccatttaattctagtgg |
864930 |
T |
|
| Q |
236 |
aatgaagcgagcaaaaactggtagatgaaaggtgtccttgttatcttagattggtatttgtccagcaacccattgctgggaatatcttgcagtacatctg |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
864929 |
aatgaagcgagcaaaaactggtagatgaaaggtgtccttgttatcttagattggtatttgtccagcaacccattgctgggaatatcttgcagtacatctg |
864830 |
T |
|
| Q |
336 |
catcaatgcagctatgaaagaataggctgacaactattgctggctagcattctggtgatttt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
864829 |
catcaatgcagctatgaaagaataggctgacaattattgctggctagcattctggtgatttt |
864768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 27672421 - 27672294
Alignment:
| Q |
114 |
caggatgagtcagaagatttcatcaaaaggcagcagttgcgggaattggcattgctgaattcaaatttaagagaagagagtcctggaccaagcggtagtg |
213 |
Q |
| |
|
||||| |||||| |||| || || || |||||||||||||| ||||| || |||||||||||||||| |||||||||||||| || ||||| || |||| |
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| T |
27672421 |
caggacgagtcacaagactttattaagaggcagcagttgcgcgaattagctctgctgaattcaaatttcagagaagagagtccagggccaagtggcagtg |
27672322 |
T |
|
| Q |
214 |
tatctccatttaattctagtggaatgaa |
241 |
Q |
| |
|
| || ||||| ||||| || |||||||| |
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|
| T |
27672321 |
tgtccccattcaattcaagcggaatgaa |
27672294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 27666829 - 27666769
Alignment:
| Q |
338 |
tcaatgcagctatgaaa-gaataggctgacaactattgctggctagcattctggtgatttt |
397 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| | ||||||| ||||||||||||| |||| |
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|
| T |
27666829 |
tcaatgcagctgtgaaaagaataggctgacaattcttgctggttagcattctggtggtttt |
27666769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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