View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_28 (Length: 414)
Name: NF16741_low_28
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 397
Target Start/End: Original strand, 39127211 - 39127597
Alignment:
| Q |
11 |
aatgaagcaagtagtactgctatgatcttggcaaacacagagcttaacttggaagaagattcaattgatgttcatgtcttgcctgcaacattagtaggat |
110 |
Q |
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| T |
39127211 |
aatgaagcaagtagtactgctatgatcttggcaaacacagagcttaacttggaagaagattcaattgatgttcatgtcttgcctgcaacattagtaggat |
39127310 |
T |
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| Q |
111 |
ttgatgaatcaatccccttgaaatcttacataaactccacaacacggccactttctcagattgaatttggagaaacaataatagggaagtctatagcacc |
210 |
Q |
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| T |
39127311 |
ttgatgaatcaatccccttgaaatcttacataaactccacaacacggccactttctcagattgaatttggagaaacaataatagggaagtctatagcacc |
39127410 |
T |
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| Q |
211 |
agcattagcaagattctcagttagagggaaaagtttacaaaccattcaatccttaaaccaaattttatagctccacagtcaacattattgctgcatggcc |
310 |
Q |
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| T |
39127411 |
agcattagcaagattctcagttagagggaaaagtttacaaaccattcaatccttaaaccaaattttatagctccacagtcaacattattgctgcatggcc |
39127510 |
T |
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| Q |
311 |
tcagaaccttggtccgataagccttccagagaacaccagaagactgacttctctatcatgttagacacctcaatgacatgtcctcat |
397 |
Q |
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| T |
39127511 |
tcagaaccttggtccgataagccttccagagaacaccagaagactgacttctctatcatgtttgacacctcaatgacatgtcctcat |
39127597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 39480211 - 39479825
Alignment:
| Q |
14 |
gaagcaagtagtactgctatgatcttggcaaacacagagcttaacttggaagaagattcaattgatgttcatgtcttgcctgcaacattagtaggatttg |
113 |
Q |
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|||||| || || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||| |
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| T |
39480211 |
gaagcaggtggtgctgctatgatcttggcaaacacagagctaaacttggaagaagattcggttgatgttcatctcttacctgcaacattggtaggatttg |
39480112 |
T |
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| Q |
114 |
atgaatcaatccccttgaaatcttacataaactccacaacacggccactttctcagattgaatttggagaaacaataatagggaagtctatagcaccagc |
213 |
Q |
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|||||||| || |||||||| |||||||||||||||||||| |||||||| || |||||||||||||| ||| ||| |||||||||| ||||||||| |
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| T |
39480111 |
atgaatcagtcaccttgaaaacttacataaactccacaacaaggccacttgctaggattgaatttggaggaactgtaactgggaagtctagagcaccagc |
39480012 |
T |
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| Q |
214 |
attagcaagattctcagttagagggaaaagttt-acaaaccattcaatccttaaaccaaattttatagctcca-cagtcaacattattgctgcatggcct |
311 |
Q |
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| T |
39480011 |
agtagcagtattctcagctagaggaccaagtttcacaaacccttcaatccttaaaccagatgttatagctccaggagtcaacatcattgctgcatggcct |
39479912 |
T |
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| Q |
312 |
cagaaccttggtccgataagccttccagagaacaccagaagact-gacttctctatcatgttagacacctcaatgacatgtcctcat |
397 |
Q |
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|||||||||||||| | |||| ||||| |||| |||||| | |||||||| |||||| || ||||||||| ||||||||||| |
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| T |
39479911 |
cagaaccttggtcctactggcctaccagatgacactagaagagtaaacttctctgtcatgtcaggtacctcaatgtcatgtcctcat |
39479825 |
T |
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