View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_low_29 (Length: 414)
Name: NF16741_low_29
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_29 |
 | |
|
| [»] scaffold1089 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 14308357 - 14307962
Alignment:
| Q |
1 |
attctactacaccatcccagccacgaaagatggaattaaagtgtagtttaatgtgaattaagtttggaaacattgaaatgcttttgaaagtatccatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14308357 |
attctactacaccatcccagccacgaaagatggaattaaattgtagtttaatgtgaattaagtttcgaaacattgaaatgcttttgaaagtatccatttc |
14308258 |
T |
|
| Q |
101 |
tgtgtggttcatgcatagaaactcgacattatcaattacattactcggaacatcaaccggatcaatttcagctctaaccaatttagacaaggacaactga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14308257 |
tgtgtggttcatgcatagaaactcgacattatcaattacattactcggaacatcaaccggatcaatttcagctctaaccaatttagacaaggacaactga |
14308158 |
T |
|
| Q |
201 |
caaggatttaaactcttccaacacattgttgtcatcccattccatagagaaaagataaatatgcaaatcttctagaatataacaaccgcaaagaagtttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14308157 |
caaggatttaaactcttccaacacattgttgtcatcccattccatagagaaaagataaatatgcaaatcttctagaatataacaaccgcaaagaagtttc |
14308058 |
T |
|
| Q |
301 |
ctgaaatcattttggtttatgaaataaacatcgttcaaatgtagggttttaagctatggaagatcaacacaaaaacgatcacttgcaactcgtacc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14308057 |
ctgaaatcattttggtttatgaaataaatatcgttcaaatgtagggttttaagctatggaagatcaacacaaaaacgatcacttgcaactcgtacc |
14307962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 31262183 - 31262134
Alignment:
| Q |
44 |
tagtttaatgtgaattaagtttggaaacattgaaatgcttttgaaagtat |
93 |
Q |
| |
|
|||||||||||||||||| ||| |||||| || |||| |||||||||||| |
|
|
| T |
31262183 |
tagtttaatgtgaattaaattttgaaacaatggaatggttttgaaagtat |
31262134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 921 - 981
Alignment:
| Q |
12 |
ccatcccagccacgaaagatggaattaaagtgtagtttaatgtgaattaagtttggaaaca |
72 |
Q |
| |
|
|||||||||||| |||||| | ||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
921 |
ccatcccagccatgaaagaagcaataaaactgtagtttaatgtgaattaagtttcgaaaca |
981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 14438556 - 14438617
Alignment:
| Q |
12 |
ccatcccagccacgaaagatggaattaaagtgtagtttaatgtgaattaagtttggaaacat |
73 |
Q |
| |
|
|||||||||||| |||||| ||| ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
14438556 |
ccatcccagccaggaaagaaccaataaaactgtagtttaatgtgaattaagttttgaaacat |
14438617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 43694146 - 43694190
Alignment:
| Q |
327 |
aacatcgttcaaatgtagggttttaagctatggaagatcaacaca |
371 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
43694146 |
aacatagttgaaatgtagggttttgagctatggaagatcaacaca |
43694190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University